Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GATA6-AS1 (GATA6 antisense RNA 1 (head to head))

Identity

Alias_symbol (synonym)locus5689
Other alias
HGNC (Hugo) GATA6-AS1
LocusID (NCBI) 100128893
Atlas_Id 63712
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 19746859 and ends at 19748929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATA6-AS1   48840
Cards
Entrez_Gene (NCBI)GATA6-AS1  100128893  GATA6 antisense RNA 1 (head to head)
Aliaseslocus5689
GeneCards (Weizmann)GATA6-AS1
Ensembl hg19 (Hinxton)ENSG00000266010 [Gene_View]  chr18:19746859-19748929 [Contig_View]  GATA6-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000266010 [Gene_View]  chr18:19746859-19748929 [Contig_View]  GATA6-AS1 [Vega]
ICGC DataPortalENSG00000266010
TCGA cBioPortalGATA6-AS1
AceView (NCBI)GATA6-AS1
Genatlas (Paris)GATA6-AS1
WikiGenes100128893
SOURCE (Princeton)GATA6-AS1
Genetics Home Reference (NIH)GATA6-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)GATA6-AS1  -     chr18:19746859-19748929 -  18q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GATA6-AS1  -     18q11.2   [Description]    (hg38-Dec_2013)
EnsemblGATA6-AS1 - 18q11.2 [CytoView hg19]  GATA6-AS1 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBIGATA6-AS1 [Mapview hg19]  GATA6-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123079 HG509832 HG509833 HG509834 HG509835
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_032677 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)GATA6-AS1
Cluster EST : UnigeneHs.514745 [ NCBI ]
CGAP (NCI)Hs.514745
Alternative Splicing GalleryENSG00000266010
Gene ExpressionGATA6-AS1 [ NCBI-GEO ]   GATA6-AS1 [ EBI - ARRAY_EXPRESS ]   GATA6-AS1 [ SEEK ]   GATA6-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GATA6-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100128893
GTEX Portal (Tissue expression)GATA6-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GATA6-AS1
DMDM Disease mutations100128893
Blocks (Seattle)GATA6-AS1
Human Protein AtlasENSG00000266010
Protein Interaction databases
FunCoupENSG00000266010
BioGRIDGATA6-AS1
STRING (EMBL)GATA6-AS1
ZODIACGATA6-AS1
Ontologies - Pathways
Huge Navigator GATA6-AS1 [HugePedia]
snp3D : Map Gene to Disease100128893
BioCentury BCIQGATA6-AS1
ClinGenGATA6-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128893
Clinical trialGATA6-AS1
Miscellaneous
canSAR (ICR)GATA6-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATA6-AS1
EVEXGATA6-AS1
GoPubMedGATA6-AS1
iHOPGATA6-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:51 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.