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GATAD1 (GATA zinc finger domain containing 1)

Identity

Alias_symbol (synonym)ODAG
RG083M05.2
FLJ22489
Other aliasCMD2B
HGNC (Hugo) GATAD1
LocusID (NCBI) 57798
Atlas_Id 63713
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 92447448 and ends at 92460067 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATAD1   29941
LRG (Locus Reference Genomic)LRG_746
Cards
Entrez_Gene (NCBI)GATAD1  57798  GATA zinc finger domain containing 1
AliasesCMD2B; ODAG; RG083M05.2
GeneCards (Weizmann)GATAD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:92447448-92460067 [Contig_View]  GATAD1 [Vega]
TCGA cBioPortalGATAD1
AceView (NCBI)GATAD1
Genatlas (Paris)GATAD1
WikiGenes57798
SOURCE (Princeton)GATAD1
Genetics Home Reference (NIH)GATAD1
Genomic and cartography
GoldenPath hg38 (UCSC)GATAD1  -     chr7:92447448-92460067 +  7q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATAD1  -     7q21.2   [Description]    (hg19-Feb_2009)
EnsemblGATAD1 - 7q21.2 [CytoView hg19]  GATAD1 - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBIGATAD1 [Mapview hg19]  GATAD1 [Mapview hg38]
OMIM614518   614672   
Gene and transcription
Genbank (Entrez)AB073650 AI352515 AI917195 AK026142 AK098014
RefSeq transcript (Entrez)NM_021167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATAD1
Cluster EST : UnigeneHs.21145 [ NCBI ]
CGAP (NCI)Hs.21145
Gene ExpressionGATAD1 [ NCBI-GEO ]   GATAD1 [ EBI - ARRAY_EXPRESS ]   GATAD1 [ SEEK ]   GATAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GATAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57798
GTEX Portal (Tissue expression)GATAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUU5
Splice isoforms : SwissVarQ8WUU5
PhosPhoSitePlusQ8WUU5
Domaine pattern : Prosite (Expaxy)GATA_ZN_FINGER_2 (PS50114)   
Domains : Interpro (EBI)Znf_GATA    Znf_NHR/GATA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GATAD1
DMDM Disease mutations57798
Blocks (Seattle)GATAD1
SuperfamilyQ8WUU5
Peptide AtlasQ8WUU5
HPRD17656
IPIIPI00171123   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUU5
IntAct (EBI)Q8WUU5
BioGRIDGATAD1
STRING (EMBL)GATAD1
ZODIACGATAD1
Ontologies - Pathways
QuickGOQ8WUU5
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  zinc ion binding  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  zinc ion binding  sequence-specific DNA binding  
NDEx NetworkGATAD1
Atlas of Cancer Signalling NetworkGATAD1
Wikipedia pathwaysGATAD1
Orthology - Evolution
OrthoDB57798
Phylogenetic Trees/Animal Genes : TreeFamGATAD1
HOVERGENQ8WUU5
HOGENOMQ8WUU5
Homologs : HomoloGeneGATAD1
Homology/Alignments : Family Browser (UCSC)GATAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATAD1
dbVarGATAD1
ClinVarGATAD1
1000_GenomesGATAD1 
Exome Variant ServerGATAD1
ExAC (Exome Aggregation Consortium)GATAD1 (select the gene name)
Genetic variants : HAPMAP57798
Genomic Variants (DGV)GATAD1 [DGVbeta]
DECIPHERGATAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGATAD1 
Mutations
ICGC Data PortalGATAD1 
TCGA Data PortalGATAD1 
Broad Tumor PortalGATAD1
OASIS PortalGATAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGATAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch GATAD1
DgiDB (Drug Gene Interaction Database)GATAD1
DoCM (Curated mutations)GATAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATAD1 (select a term)
intoGenGATAD1
Cancer3DGATAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614518    614672   
Orphanet635   
MedgenGATAD1
Genetic Testing Registry GATAD1
NextProtQ8WUU5 [Medical]
TSGene57798
GENETestsGATAD1
Target ValidationGATAD1
Huge Navigator GATAD1 [HugePedia]
snp3D : Map Gene to Disease57798
BioCentury BCIQGATAD1
ClinGenGATAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57798
Chemical/Pharm GKB GenePA142671745
Clinical trialGATAD1
Miscellaneous
canSAR (ICR)GATAD1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATAD1
EVEXGATAD1
GoPubMedGATAD1
iHOPGATAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:50:22 CEST 2017

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