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GATB (glutamyl-tRNA amidotransferase subunit B)

Identity

Alias_namesPET112L
PET112
PET112 (yeast homolog)-like
glutamyl-tRNA(Gln) amidotransferase, subunit B
Other aliasHSPC199
HGNC (Hugo) GATB
LocusID (NCBI) 5188
Atlas_Id 63714
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 151670656 and ends at 151761023 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATB   8849
Cards
Entrez_Gene (NCBI)GATB  5188  glutamyl-tRNA amidotransferase subunit B
AliasesHSPC199; PET112; PET112L
GeneCards (Weizmann)GATB
Ensembl hg19 (Hinxton)ENSG00000059691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000059691 [Gene_View]  chr4:151670656-151761023 [Contig_View]  GATB [Vega]
ICGC DataPortalENSG00000059691
TCGA cBioPortalGATB
AceView (NCBI)GATB
Genatlas (Paris)GATB
WikiGenes5188
SOURCE (Princeton)GATB
Genetics Home Reference (NIH)GATB
Genomic and cartography
GoldenPath hg38 (UCSC)GATB  -     chr4:151670656-151761023 -  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATB  -     4q31.3   [Description]    (hg19-Feb_2009)
EnsemblGATB - 4q31.3 [CytoView hg19]  GATB - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBIGATB [Mapview hg19]  GATB [Mapview hg38]
OMIM603645   
Gene and transcription
Genbank (Entrez)AB019410 AF026851 AF151033 AK124986 AK222887
RefSeq transcript (Entrez)NM_004564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATB
Cluster EST : UnigeneHs.636045 [ NCBI ]
CGAP (NCI)Hs.636045
Alternative Splicing GalleryENSG00000059691
Gene ExpressionGATB [ NCBI-GEO ]   GATB [ EBI - ARRAY_EXPRESS ]   GATB [ SEEK ]   GATB [ MEM ]
Gene Expression Viewer (FireBrowse)GATB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5188
GTEX Portal (Tissue expression)GATB
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75879   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75879  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75879
Splice isoforms : SwissVarO75879
PhosPhoSitePlusO75879
Domaine pattern : Prosite (Expaxy)GATB (PS01234)   
Domains : Interpro (EBI)Apn/Gln-ADT_bsu    Asn/Gln-tRNA_amidoTrfase_suB/E    Asn/Gln-tRNA_Trfase_suB/E_cat    Asn/Gln_amidotransferase    Asn/Gln_tRNA_amidoTrfrase-rel    Gln-tRNA_amidoTrfase_suB_CS   
Domain families : Pfam (Sanger)GatB_N (PF02934)    GatB_Yqey (PF02637)   
Domain families : Pfam (NCBI)pfam02934    pfam02637   
Domain families : Smart (EMBL)GatB_Yqey (SM00845)  
Conserved Domain (NCBI)GATB
DMDM Disease mutations5188
Blocks (Seattle)GATB
SuperfamilyO75879
Human Protein AtlasENSG00000059691
Peptide AtlasO75879
HPRD04706
IPIIPI00027228   IPI00965050   IPI00967487   IPI00967074   IPI00967752   IPI00966817   IPI00966275   IPI00966517   
Protein Interaction databases
DIP (DOE-UCLA)O75879
IntAct (EBI)O75879
FunCoupENSG00000059691
BioGRIDGATB
STRING (EMBL)GATB
ZODIACGATB
Ontologies - Pathways
QuickGOO75879
Ontology : AmiGOATP binding  mitochondrion  translation  translation factor activity, RNA binding  glutamyl-tRNA(Gln) amidotransferase complex  mitochondrial translation  glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity  glutaminyl-tRNAGln biosynthesis via transamidation  
Ontology : EGO-EBIATP binding  mitochondrion  translation  translation factor activity, RNA binding  glutamyl-tRNA(Gln) amidotransferase complex  mitochondrial translation  glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity  glutaminyl-tRNAGln biosynthesis via transamidation  
NDEx NetworkGATB
Atlas of Cancer Signalling NetworkGATB
Wikipedia pathwaysGATB
Orthology - Evolution
OrthoDB5188
GeneTree (enSembl)ENSG00000059691
Phylogenetic Trees/Animal Genes : TreeFamGATB
HOVERGENO75879
HOGENOMO75879
Homologs : HomoloGeneGATB
Homology/Alignments : Family Browser (UCSC)GATB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATB
dbVarGATB
ClinVarGATB
1000_GenomesGATB 
Exome Variant ServerGATB
ExAC (Exome Aggregation Consortium)GATB (select the gene name)
Genetic variants : HAPMAP5188
Genomic Variants (DGV)GATB [DGVbeta]
DECIPHERGATB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGATB 
Mutations
ICGC Data PortalGATB 
TCGA Data PortalGATB 
Broad Tumor PortalGATB
OASIS PortalGATB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGATB
BioMutasearch GATB
DgiDB (Drug Gene Interaction Database)GATB
DoCM (Curated mutations)GATB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATB (select a term)
intoGenGATB
Cancer3DGATB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603645   
Orphanet
MedgenGATB
Genetic Testing Registry GATB
NextProtO75879 [Medical]
TSGene5188
GENETestsGATB
Target ValidationGATB
Huge Navigator GATB [HugePedia]
snp3D : Map Gene to Disease5188
BioCentury BCIQGATB
ClinGenGATB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5188
Chemical/Pharm GKB GenePA33191
Clinical trialGATB
Miscellaneous
canSAR (ICR)GATB (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATB
EVEXGATB
GoPubMedGATB
iHOPGATB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:09:13 CEST 2017

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