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GATC (glutamyl-tRNA amidotransferase subunit C)

Identity

Alias_namesglutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)
Alias_symbol (synonym)FLJ37000
15E1.2
gatC
Other alias
HGNC (Hugo) GATC
LocusID (NCBI) 283459
Atlas_Id 63715
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 120446438 and ends at 120463753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GATC (12q24.31) / DCTD (4q35.1)GATC (12q24.31) / EED (11q14.2)HLA-DQA1 (6p21.32) / GATC (12q24.31)
SRSF9 (12q24.31) / GATC (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATC   25068
Cards
Entrez_Gene (NCBI)GATC  283459  glutamyl-tRNA amidotransferase subunit C
Aliases15E1.2
GeneCards (Weizmann)GATC
Ensembl hg19 (Hinxton)ENSG00000257218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257218 [Gene_View]  chr12:120446438-120463753 [Contig_View]  GATC [Vega]
ICGC DataPortalENSG00000257218
TCGA cBioPortalGATC
AceView (NCBI)GATC
Genatlas (Paris)GATC
WikiGenes283459
SOURCE (Princeton)GATC
Genetics Home Reference (NIH)GATC
Genomic and cartography
GoldenPath hg38 (UCSC)GATC  -     chr12:120446438-120463753 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATC  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblGATC - 12q24.31 [CytoView hg19]  GATC - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIGATC [Mapview hg19]  GATC [Mapview hg38]
OMIM617210   
Gene and transcription
Genbank (Entrez)AK094319 BC034962 BC047778 BC064523 BC107145
RefSeq transcript (Entrez)NM_176818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATC
Cluster EST : UnigeneHs.706889 [ NCBI ]
CGAP (NCI)Hs.706889
Alternative Splicing GalleryENSG00000257218
Gene ExpressionGATC [ NCBI-GEO ]   GATC [ EBI - ARRAY_EXPRESS ]   GATC [ SEEK ]   GATC [ MEM ]
Gene Expression Viewer (FireBrowse)GATC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283459
GTEX Portal (Tissue expression)GATC
Human Protein AtlasENSG00000257218-GATC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43716   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43716  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43716
Splice isoforms : SwissVarO43716
PhosPhoSitePlusO43716
Domains : Interpro (EBI)Asp/Glu-ADT_csu   
Domain families : Pfam (Sanger)Glu-tRNAGln (PF02686)   
Domain families : Pfam (NCBI)pfam02686   
Conserved Domain (NCBI)GATC
DMDM Disease mutations283459
Blocks (Seattle)GATC
SuperfamilyO43716
Human Protein Atlas [tissue]ENSG00000257218-GATC [tissue]
Peptide AtlasO43716
HPRD15934
IPIIPI00013832   IPI01021781   IPI01021529   
Protein Interaction databases
DIP (DOE-UCLA)O43716
IntAct (EBI)O43716
FunCoupENSG00000257218
BioGRIDGATC
STRING (EMBL)GATC
ZODIACGATC
Ontologies - Pathways
QuickGOO43716
Ontology : AmiGOprotein binding  ATP binding  mitochondrion  regulation of translational fidelity  glutamyl-tRNA(Gln) amidotransferase complex  mitochondrial translation  glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity  glutaminyl-tRNAGln biosynthesis via transamidation  
Ontology : EGO-EBIprotein binding  ATP binding  mitochondrion  regulation of translational fidelity  glutamyl-tRNA(Gln) amidotransferase complex  mitochondrial translation  glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity  glutaminyl-tRNAGln biosynthesis via transamidation  
Pathways : KEGGAminoacyl-tRNA biosynthesis   
NDEx NetworkGATC
Atlas of Cancer Signalling NetworkGATC
Wikipedia pathwaysGATC
Orthology - Evolution
OrthoDB283459
GeneTree (enSembl)ENSG00000257218
Phylogenetic Trees/Animal Genes : TreeFamGATC
HOVERGENO43716
HOGENOMO43716
Homologs : HomoloGeneGATC
Homology/Alignments : Family Browser (UCSC)GATC
Gene fusions - Rearrangements
Tumor Fusion PortalGATC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATC
dbVarGATC
ClinVarGATC
1000_GenomesGATC 
Exome Variant ServerGATC
ExAC (Exome Aggregation Consortium)ENSG00000257218
GNOMAD BrowserENSG00000257218
Genetic variants : HAPMAP283459
Genomic Variants (DGV)GATC [DGVbeta]
DECIPHERGATC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGATC 
Mutations
ICGC Data PortalGATC 
TCGA Data PortalGATC 
Broad Tumor PortalGATC
OASIS PortalGATC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGATC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GATC
DgiDB (Drug Gene Interaction Database)GATC
DoCM (Curated mutations)GATC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATC (select a term)
intoGenGATC
Cancer3DGATC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617210   
Orphanet
DisGeNETGATC
MedgenGATC
Genetic Testing Registry GATC
NextProtO43716 [Medical]
TSGene283459
GENETestsGATC
Target ValidationGATC
Huge Navigator GATC [HugePedia]
snp3D : Map Gene to Disease283459
BioCentury BCIQGATC
ClinGenGATC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283459
Chemical/Pharm GKB GenePA162389278
Clinical trialGATC
Miscellaneous
canSAR (ICR)GATC (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATC
EVEXGATC
GoPubMedGATC
iHOPGATC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:11 CET 2017

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