Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GATD1 (glutamine amidotransferase like class 1 domain containing 1)

Identity

Alias_namesPDDC1
Parkinson disease 7 domain containing 1
Alias_symbol (synonym)FLJ34283
Other alias
HGNC (Hugo) GATD1
LocusID (NCBI) 347862
Atlas_Id 78940
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 767223 and ends at 777502 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATD1   26616
Cards
Entrez_Gene (NCBI)GATD1  347862  glutamine amidotransferase like class 1 domain containing 1
AliasesPDDC1
GeneCards (Weizmann)GATD1
Ensembl hg19 (Hinxton)ENSG00000177225 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177225 [Gene_View]  chr11:767223-777502 [Contig_View]  GATD1 [Vega]
ICGC DataPortalENSG00000177225
TCGA cBioPortalGATD1
AceView (NCBI)GATD1
Genatlas (Paris)GATD1
WikiGenes347862
SOURCE (Princeton)GATD1
Genetics Home Reference (NIH)GATD1
Genomic and cartography
GoldenPath hg38 (UCSC)GATD1  -     chr11:767223-777502 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATD1  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblGATD1 - 11p15.5 [CytoView hg19]  GATD1 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIGATD1 [Mapview hg19]  GATD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091602 AK092816 AK094678 AK128653 AK293559
RefSeq transcript (Entrez)NM_001318818 NM_001318820 NM_001318821 NM_001318822 NM_001318823 NM_001318824 NM_182612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATD1
Cluster EST : UnigeneHs.218362 [ NCBI ]
CGAP (NCI)Hs.218362
Alternative Splicing GalleryENSG00000177225
Gene ExpressionGATD1 [ NCBI-GEO ]   GATD1 [ EBI - ARRAY_EXPRESS ]   GATD1 [ SEEK ]   GATD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GATD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347862
GTEX Portal (Tissue expression)GATD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB37
Splice isoforms : SwissVarQ8NB37
PhosPhoSitePlusQ8NB37
Domains : Interpro (EBI)Class_I_gatase-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GATD1
DMDM Disease mutations347862
Blocks (Seattle)GATD1
SuperfamilyQ8NB37
Human Protein AtlasENSG00000177225
Peptide AtlasQ8NB37
IPIIPI00168112   IPI00719079   IPI00167976   IPI00443655   IPI01012151   IPI00977662   IPI00976498   IPI00983323   IPI01008788   IPI00985101   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB37
IntAct (EBI)Q8NB37
FunCoupENSG00000177225
BioGRIDGATD1
STRING (EMBL)GATD1
ZODIACGATD1
Ontologies - Pathways
QuickGOQ8NB37
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkGATD1
Atlas of Cancer Signalling NetworkGATD1
Wikipedia pathwaysGATD1
Orthology - Evolution
OrthoDB347862
GeneTree (enSembl)ENSG00000177225
Phylogenetic Trees/Animal Genes : TreeFamGATD1
HOVERGENQ8NB37
HOGENOMQ8NB37
Homologs : HomoloGeneGATD1
Homology/Alignments : Family Browser (UCSC)GATD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATD1
dbVarGATD1
ClinVarGATD1
1000_GenomesGATD1 
Exome Variant ServerGATD1
ExAC (Exome Aggregation Consortium)GATD1 (select the gene name)
Genetic variants : HAPMAP347862
Genomic Variants (DGV)GATD1 [DGVbeta]
DECIPHERGATD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGATD1 
Mutations
ICGC Data PortalGATD1 
TCGA Data PortalGATD1 
Broad Tumor PortalGATD1
OASIS PortalGATD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGATD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GATD1
DgiDB (Drug Gene Interaction Database)GATD1
DoCM (Curated mutations)GATD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATD1 (select a term)
intoGenGATD1
Cancer3DGATD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGATD1
Genetic Testing Registry GATD1
NextProtQ8NB37 [Medical]
TSGene347862
GENETestsGATD1
Target ValidationGATD1
Huge Navigator GATD1 [HugePedia]
snp3D : Map Gene to Disease347862
BioCentury BCIQGATD1
ClinGenGATD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347862
Chemical/Pharm GKB GenePA142671193
Clinical trialGATD1
Miscellaneous
canSAR (ICR)GATD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATD1
EVEXGATD1
GoPubMedGATD1
iHOPGATD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:09:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.