Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GATD3A (glutamine amidotransferase like class 1 domain containing 3A)

Identity

Other aliasC21orf33
ES1
GATD3
GT335
HES1
KNPH
KNPI
HGNC (Hugo) GATD3A
LocusID (NCBI) 8209
Atlas_Id 80283
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44133612 and ends at 44145723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GATD3A   1273
Cards
Entrez_Gene (NCBI)GATD3A  8209  glutamine amidotransferase like class 1 domain containing 3A
AliasesC21orf33; ES1; GATD3; GT335; 
HES1; KNPH; KNPI
GeneCards (Weizmann)GATD3A
Ensembl hg19 (Hinxton)ENSG00000160221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160221 [Gene_View]  ENSG00000160221 [Sequence]  chr21:44133612-44145723 [Contig_View]  GATD3A [Vega]
ICGC DataPortalENSG00000160221
TCGA cBioPortalGATD3A
AceView (NCBI)GATD3A
Genatlas (Paris)GATD3A
WikiGenes8209
SOURCE (Princeton)GATD3A
Genetics Home Reference (NIH)GATD3A
Genomic and cartography
GoldenPath hg38 (UCSC)GATD3A  -     chr21:44133612-44145723 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATD3A  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathGATD3A - 21q22.3 [CytoView hg19]  GATD3A - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160221
Mapping of homologs : NCBIGATD3A [Mapview hg19]  GATD3A [Mapview hg38]
OMIM601659   
Gene and transcription
Genbank (Entrez)AA045757 AW292582 BI196781 BP283346 BQ011869
RefSeq transcript (Entrez)NM_001320383 NM_001320384 NM_004649 NM_198155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATD3A
Cluster EST : UnigeneHs.413482 [ NCBI ]
CGAP (NCI)Hs.413482
Alternative Splicing GalleryENSG00000160221
Gene ExpressionGATD3A [ NCBI-GEO ]   GATD3A [ EBI - ARRAY_EXPRESS ]   GATD3A [ SEEK ]   GATD3A [ MEM ]
Gene Expression Viewer (FireBrowse)GATD3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8209
GTEX Portal (Tissue expression)GATD3A
Human Protein AtlasENSG00000160221-GATD3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GATD3A
DMDM Disease mutations8209
Blocks (Seattle)GATD3A
Human Protein Atlas [tissue]ENSG00000160221-GATD3A [tissue]
IPIIPI00024913   IPI00218482   IPI00795385   IPI00794316   IPI00793677   IPI00798025   
Protein Interaction databases
FunCoupENSG00000160221
BioGRIDGATD3A
STRING (EMBL)GATD3A
ZODIACGATD3A
Ontologies - Pathways
Huge Navigator GATD3A [HugePedia]
snp3D : Map Gene to Disease8209
BioCentury BCIQGATD3A
ClinGenGATD3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8209
Chemical/Pharm GKB GenePA25828
Clinical trialGATD3A
Miscellaneous
canSAR (ICR)GATD3A (select the gene name)
DataMed IndexGATD3A
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATD3A
EVEXGATD3A
GoPubMedGATD3A
iHOPGATD3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:29:29 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.