Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GATS (GATS, stromal antigen 3 opposite strand)

Identity

Alias_symbol (synonym)DKFZp686B07267
STAG3OS
Other alias
HGNC (Hugo) GATS
LocusID (NCBI) 352954
Atlas_Id 63717
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100200655 and ends at 100272232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GATS (7q22.1) / C7orf25 (7p14.1)GATS (7q22.1) / GTF2F1 (19p13.3)ZNF3 (7q22.1) / GATS (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATS   29954
Cards
Entrez_Gene (NCBI)GATS  352954  GATS, stromal antigen 3 opposite strand
AliasesSTAG3OS
GeneCards (Weizmann)GATS
Ensembl hg19 (Hinxton)ENSG00000239521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239521 [Gene_View]  chr7:100200655-100272232 [Contig_View]  GATS [Vega]
ICGC DataPortalENSG00000239521
TCGA cBioPortalGATS
AceView (NCBI)GATS
Genatlas (Paris)GATS
WikiGenes352954
SOURCE (Princeton)GATS
Genetics Home Reference (NIH)GATS
Genomic and cartography
GoldenPath hg38 (UCSC)GATS  -     chr7:100200655-100272232 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATS  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblGATS - 7q22.1 [CytoView hg19]  GATS - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIGATS [Mapview hg19]  GATS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055399 AK056608 AK091418 AK092358 AK095056
RefSeq transcript (Entrez)NM_178831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATS
Cluster EST : UnigeneHs.556063 [ NCBI ]
CGAP (NCI)Hs.556063
Alternative Splicing GalleryENSG00000239521
Gene ExpressionGATS [ NCBI-GEO ]   GATS [ EBI - ARRAY_EXPRESS ]   GATS [ SEEK ]   GATS [ MEM ]
Gene Expression Viewer (FireBrowse)GATS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)352954
GTEX Portal (Tissue expression)GATS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAP1
Splice isoforms : SwissVarQ8NAP1
PhosPhoSitePlusQ8NAP1
Domains : Interpro (EBI)GATS-like    GATS-like_ACT_dom   
Domain families : Pfam (Sanger)ACT_7 (PF13840)   
Domain families : Pfam (NCBI)pfam13840   
Conserved Domain (NCBI)GATS
DMDM Disease mutations352954
Blocks (Seattle)GATS
SuperfamilyQ8NAP1
Human Protein AtlasENSG00000239521
Peptide AtlasQ8NAP1
HPRD17030
IPIIPI00550403   IPI00844574   IPI00251446   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAP1
IntAct (EBI)Q8NAP1
FunCoupENSG00000239521
BioGRIDGATS
STRING (EMBL)GATS
ZODIACGATS
Ontologies - Pathways
QuickGOQ8NAP1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGATS
Atlas of Cancer Signalling NetworkGATS
Wikipedia pathwaysGATS
Orthology - Evolution
OrthoDB352954
GeneTree (enSembl)ENSG00000239521
Phylogenetic Trees/Animal Genes : TreeFamGATS
HOVERGENQ8NAP1
HOGENOMQ8NAP1
Homologs : HomoloGeneGATS
Homology/Alignments : Family Browser (UCSC)GATS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATS
dbVarGATS
ClinVarGATS
1000_GenomesGATS 
Exome Variant ServerGATS
ExAC (Exome Aggregation Consortium)GATS (select the gene name)
Genetic variants : HAPMAP352954
Genomic Variants (DGV)GATS [DGVbeta]
DECIPHERGATS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGATS 
Mutations
ICGC Data PortalGATS 
TCGA Data PortalGATS 
Broad Tumor PortalGATS
OASIS PortalGATS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGATS
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch GATS
DgiDB (Drug Gene Interaction Database)GATS
DoCM (Curated mutations)GATS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATS (select a term)
intoGenGATS
Cancer3DGATS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGATS
Genetic Testing Registry GATS
NextProtQ8NAP1 [Medical]
TSGene352954
GENETestsGATS
Target ValidationGATS
Huge Navigator GATS [HugePedia]
snp3D : Map Gene to Disease352954
BioCentury BCIQGATS
ClinGenGATS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD352954
Chemical/Pharm GKB GenePA164720213
Clinical trialGATS
Miscellaneous
canSAR (ICR)GATS (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATS
EVEXGATS
GoPubMedGATS
iHOPGATS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:50:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.