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GATSL2 (GATS protein-like 2)

Identity

Alias_namesGATSL1
GATS protein-like 1
Other alias
HGNC (Hugo) GATSL2
LocusID (NCBI) 729438
Atlas_Id 63718
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 74800772 and ends at 74867509 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATSL2   37073
Cards
Entrez_Gene (NCBI)GATSL2  729438  GATS protein-like 2
AliasesGATSL1
GeneCards (Weizmann)GATSL2
Ensembl hg19 (Hinxton) [Gene_View]  chr7:74800772-74867509 [Contig_View]  GATSL2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:74800772-74867509 [Contig_View]  GATSL2 [Vega]
TCGA cBioPortalGATSL2
AceView (NCBI)GATSL2
Genatlas (Paris)GATSL2
WikiGenes729438
SOURCE (Princeton)GATSL2
Genetics Home Reference (NIH)GATSL2
Genomic and cartography
GoldenPath hg19 (UCSC)GATSL2  -     chr7:74800772-74867509 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GATSL2  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblGATSL2 - 7q11.23 [CytoView hg19]  GATSL2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIGATSL2 [Mapview hg19]  GATSL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123110 AL832384 BC018936 BC048422 BC147030
RefSeq transcript (Entrez)NM_001145064
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)GATSL2
Cluster EST : UnigeneHs.728007 [ NCBI ]
CGAP (NCI)Hs.728007
Gene ExpressionGATSL2 [ NCBI-GEO ]   GATSL2 [ EBI - ARRAY_EXPRESS ]   GATSL2 [ SEEK ]   GATSL2 [ MEM ]
Gene Expression Viewer (FireBrowse)GATSL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729438
GTEX Portal (Tissue expression)GATSL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHX0
Splice isoforms : SwissVarA6NHX0
PhosPhoSitePlusA6NHX0
Domains : Interpro (EBI)GATS-like    GATS-like_ACT_dom   
Domain families : Pfam (Sanger)ACT_7 (PF13840)   
Domain families : Pfam (NCBI)pfam13840   
Conserved Domain (NCBI)GATSL2
DMDM Disease mutations729438
Blocks (Seattle)GATSL2
SuperfamilyA6NHX0
Peptide AtlasA6NHX0
IPIIPI00921468   
Protein Interaction databases
DIP (DOE-UCLA)A6NHX0
IntAct (EBI)A6NHX0
BioGRIDGATSL2
STRING (EMBL)GATSL2
ZODIACGATSL2
Ontologies - Pathways
QuickGOA6NHX0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGATSL2
Atlas of Cancer Signalling NetworkGATSL2
Wikipedia pathwaysGATSL2
Orthology - Evolution
OrthoDB729438
Phylogenetic Trees/Animal Genes : TreeFamGATSL2
HOVERGENA6NHX0
HOGENOMA6NHX0
Homologs : HomoloGeneGATSL2
Homology/Alignments : Family Browser (UCSC)GATSL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATSL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATSL2
dbVarGATSL2
ClinVarGATSL2
1000_GenomesGATSL2 
Exome Variant ServerGATSL2
ExAC (Exome Aggregation Consortium)GATSL2 (select the gene name)
Genetic variants : HAPMAP729438
Genomic Variants (DGV)GATSL2 [DGVbeta]
DECIPHER (Syndromes)7:74800772-74867509  
CONAN: Copy Number AnalysisGATSL2 
Mutations
ICGC Data PortalGATSL2 
TCGA Data PortalGATSL2 
Broad Tumor PortalGATSL2
OASIS PortalGATSL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATSL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGATSL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GATSL2
DgiDB (Drug Gene Interaction Database)GATSL2
DoCM (Curated mutations)GATSL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATSL2 (select a term)
intoGenGATSL2
Cancer3DGATSL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGATSL2
Genetic Testing Registry GATSL2
NextProtA6NHX0 [Medical]
TSGene729438
GENETestsGATSL2
Huge Navigator GATSL2 [HugePedia]
snp3D : Map Gene to Disease729438
BioCentury BCIQGATSL2
ClinGenGATSL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729438
Chemical/Pharm GKB GenePA164720237
Clinical trialGATSL2
Miscellaneous
canSAR (ICR)GATSL2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATSL2
EVEXGATSL2
GoPubMedGATSL2
iHOPGATSL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:05:52 CET 2017

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