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GATSL3 (GATS protein-like 3)

Identity

Alias_namesGATS protein-like 3
Other alias-
HGNC (Hugo) GATSL3
LocusID (NCBI) 652968
Atlas_Id 63719
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30681107 and ends at 30685616 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GATSL3 (22q12.2) / SPTAN1 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GATSL3   34423
Cards
Entrez_Gene (NCBI)GATSL3  652968  GATS protein-like 3
Aliases
GeneCards (Weizmann)GATSL3
Ensembl hg19 (Hinxton)ENSG00000239282 [Gene_View]  chr22:30681107-30685616 [Contig_View]  GATSL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000239282 [Gene_View]  chr22:30681107-30685616 [Contig_View]  GATSL3 [Vega]
ICGC DataPortalENSG00000239282
TCGA cBioPortalGATSL3
AceView (NCBI)GATSL3
Genatlas (Paris)GATSL3
WikiGenes652968
SOURCE (Princeton)GATSL3
Genetics Home Reference (NIH)GATSL3
Genomic and cartography
GoldenPath hg19 (UCSC)GATSL3  -     chr22:30681107-30685616 -  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GATSL3  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblGATSL3 - 22q12.2 [CytoView hg19]  GATSL3 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIGATSL3 [Mapview hg19]  GATSL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055587 AK309436 AK310246 BC021927 CR456449
RefSeq transcript (Entrez)NM_001037666
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)GATSL3
Cluster EST : UnigeneHs.444950 [ NCBI ]
CGAP (NCI)Hs.444950
Alternative Splicing GalleryENSG00000239282
Gene ExpressionGATSL3 [ NCBI-GEO ]   GATSL3 [ EBI - ARRAY_EXPRESS ]   GATSL3 [ SEEK ]   GATSL3 [ MEM ]
Gene Expression Viewer (FireBrowse)GATSL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)652968
GTEX Portal (Tissue expression)GATSL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTX7
Splice isoforms : SwissVarQ8WTX7
PhosPhoSitePlusQ8WTX7
Domains : Interpro (EBI)GATS-like    GATS-like_ACT_dom    GATSL3   
Domain families : Pfam (Sanger)ACT_7 (PF13840)   
Domain families : Pfam (NCBI)pfam13840   
Conserved Domain (NCBI)GATSL3
DMDM Disease mutations652968
Blocks (Seattle)GATSL3
SuperfamilyQ8WTX7
Human Protein AtlasENSG00000239282
Peptide AtlasQ8WTX7
IPIIPI00871376   IPI00878961   IPI00880152   IPI00879981   IPI00878204   IPI00878008   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTX7
IntAct (EBI)Q8WTX7
FunCoupENSG00000239282
BioGRIDGATSL3
STRING (EMBL)GATSL3
ZODIACGATSL3
Ontologies - Pathways
QuickGOQ8WTX7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGATSL3
Atlas of Cancer Signalling NetworkGATSL3
Wikipedia pathwaysGATSL3
Orthology - Evolution
OrthoDB652968
GeneTree (enSembl)ENSG00000239282
Phylogenetic Trees/Animal Genes : TreeFamGATSL3
HOVERGENQ8WTX7
HOGENOMQ8WTX7
Homologs : HomoloGeneGATSL3
Homology/Alignments : Family Browser (UCSC)GATSL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATSL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATSL3
dbVarGATSL3
ClinVarGATSL3
1000_GenomesGATSL3 
Exome Variant ServerGATSL3
ExAC (Exome Aggregation Consortium)GATSL3 (select the gene name)
Genetic variants : HAPMAP652968
Genomic Variants (DGV)GATSL3 [DGVbeta]
DECIPHER (Syndromes)22:30681107-30685616  ENSG00000239282
CONAN: Copy Number AnalysisGATSL3 
Mutations
ICGC Data PortalGATSL3 
TCGA Data PortalGATSL3 
Broad Tumor PortalGATSL3
OASIS PortalGATSL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATSL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGATSL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GATSL3
DgiDB (Drug Gene Interaction Database)GATSL3
DoCM (Curated mutations)GATSL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATSL3 (select a term)
intoGenGATSL3
Cancer3DGATSL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGATSL3
Genetic Testing Registry GATSL3
NextProtQ8WTX7 [Medical]
TSGene652968
GENETestsGATSL3
Huge Navigator GATSL3 [HugePedia]
snp3D : Map Gene to Disease652968
BioCentury BCIQGATSL3
ClinGenGATSL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD652968
Chemical/Pharm GKB GenePA164720260
Clinical trialGATSL3
Miscellaneous
canSAR (ICR)GATSL3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATSL3
EVEXGATSL3
GoPubMedGATSL3
iHOPGATSL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:05:52 CET 2017

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