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GBAS (glioblastoma amplified sequence)

Identity

Alias_symbol (synonym)NIPSNAP2
Other alias
HGNC (Hugo) GBAS
LocusID (NCBI) 2631
Atlas_Id 40691
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 56032270 and ends at 56067875 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GBAS (7p11.2) / PHYHIPL (10q21.1)SPARCL1 (4q22.1) / GBAS (7p11.2)GBAS 7p11.2 / PHYHIPL 10q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GBAS   4179
Cards
Entrez_Gene (NCBI)GBAS  2631  glioblastoma amplified sequence
AliasesNIPSNAP2
GeneCards (Weizmann)GBAS
Ensembl hg19 (Hinxton)ENSG00000146729 [Gene_View]  chr7:56032270-56067875 [Contig_View]  GBAS [Vega]
Ensembl hg38 (Hinxton)ENSG00000146729 [Gene_View]  chr7:56032270-56067875 [Contig_View]  GBAS [Vega]
ICGC DataPortalENSG00000146729
TCGA cBioPortalGBAS
AceView (NCBI)GBAS
Genatlas (Paris)GBAS
WikiGenes2631
SOURCE (Princeton)GBAS
Genetics Home Reference (NIH)GBAS
Genomic and cartography
GoldenPath hg19 (UCSC)GBAS  -     chr7:56032270-56067875 +  7p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GBAS  -     7p11.2   [Description]    (hg38-Dec_2013)
EnsemblGBAS - 7p11.2 [CytoView hg19]  GBAS - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIGBAS [Mapview hg19]  GBAS [Mapview hg38]
OMIM603004   
Gene and transcription
Genbank (Entrez)AF029786 AJ001259 AK097049 AK125036 AK315648
RefSeq transcript (Entrez)NM_001202469 NM_001483
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929330
Consensus coding sequences : CCDS (NCBI)GBAS
Cluster EST : UnigeneHs.591069 [ NCBI ]
CGAP (NCI)Hs.591069
Alternative Splicing GalleryENSG00000146729
Gene ExpressionGBAS [ NCBI-GEO ]   GBAS [ EBI - ARRAY_EXPRESS ]   GBAS [ SEEK ]   GBAS [ MEM ]
Gene Expression Viewer (FireBrowse)GBAS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2631
GTEX Portal (Tissue expression)GBAS
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75323   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75323  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75323
Splice isoforms : SwissVarO75323
PhosPhoSitePlusO75323
Domains : Interpro (EBI)Dimeric_a/b-barrel    NIPSNAP   
Domain families : Pfam (Sanger)NIPSNAP (PF07978)   
Domain families : Pfam (NCBI)pfam07978   
Conserved Domain (NCBI)GBAS
DMDM Disease mutations2631
Blocks (Seattle)GBAS
SuperfamilyO75323
Human Protein AtlasENSG00000146729
Peptide AtlasO75323
HPRD04302
IPIIPI00016077   IPI00925757   IPI00925073   IPI00926675   IPI00926887   IPI00926531   
Protein Interaction databases
DIP (DOE-UCLA)O75323
IntAct (EBI)O75323
FunCoupENSG00000146729
BioGRIDGBAS
STRING (EMBL)GBAS
ZODIACGBAS
Ontologies - Pathways
QuickGOO75323
Ontology : AmiGOprotein binding  mitochondrion  mitochondrion  integral component of plasma membrane  oxidative phosphorylation  ATP biosynthetic process  membrane  negative regulation of ATP citrate synthase activity  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrion  integral component of plasma membrane  oxidative phosphorylation  ATP biosynthetic process  membrane  negative regulation of ATP citrate synthase activity  
NDEx NetworkGBAS
Atlas of Cancer Signalling NetworkGBAS
Wikipedia pathwaysGBAS
Orthology - Evolution
OrthoDB2631
GeneTree (enSembl)ENSG00000146729
Phylogenetic Trees/Animal Genes : TreeFamGBAS
HOVERGENO75323
HOGENOMO75323
Homologs : HomoloGeneGBAS
Homology/Alignments : Family Browser (UCSC)GBAS
Gene fusions - Rearrangements
Fusion : MitelmanGBAS/PHYHIPL [7p11.2/10q21.1]  
Fusion: TCGAGBAS 7p11.2 PHYHIPL 10q21.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGBAS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GBAS
dbVarGBAS
ClinVarGBAS
1000_GenomesGBAS 
Exome Variant ServerGBAS
ExAC (Exome Aggregation Consortium)GBAS (select the gene name)
Genetic variants : HAPMAP2631
Genomic Variants (DGV)GBAS [DGVbeta]
DECIPHER (Syndromes)7:56032270-56067875  ENSG00000146729
CONAN: Copy Number AnalysisGBAS 
Mutations
ICGC Data PortalGBAS 
TCGA Data PortalGBAS 
Broad Tumor PortalGBAS
OASIS PortalGBAS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGBAS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGBAS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch GBAS
DgiDB (Drug Gene Interaction Database)GBAS
DoCM (Curated mutations)GBAS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GBAS (select a term)
intoGenGBAS
Cancer3DGBAS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603004   
Orphanet
MedgenGBAS
Genetic Testing Registry GBAS
NextProtO75323 [Medical]
TSGene2631
GENETestsGBAS
Huge Navigator GBAS [HugePedia]
snp3D : Map Gene to Disease2631
BioCentury BCIQGBAS
ClinGenGBAS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2631
Chemical/Pharm GKB GenePA28593
Clinical trialGBAS
Miscellaneous
canSAR (ICR)GBAS (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGBAS
EVEXGBAS
GoPubMedGBAS
iHOPGBAS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:02:08 CEST 2017

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