Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GBP1P1 (guanylate binding protein 1 pseudogene 1)

Identity

Alias_namesguanylate binding protein 1, interferon-inducible pseudogene 1
Other alias-
HGNC (Hugo) GBP1P1
LocusID (NCBI) 400759
Atlas_Id 63725
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 89407679 and ends at 89424934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links
Nomenclature
HGNC (Hugo)GBP1P1   39561
Cards
Entrez_Gene (NCBI)GBP1P1  400759  guanylate binding protein 1 pseudogene 1
Aliases
GeneCards (Weizmann)GBP1P1
Ensembl hg19 (Hinxton)ENSG00000225492 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225492 [Gene_View]  chr1:89407679-89424934 [Contig_View]  GBP1P1 [Vega]
ICGC DataPortalENSG00000225492
TCGA cBioPortalGBP1P1
AceView (NCBI)GBP1P1
Genatlas (Paris)GBP1P1
WikiGenes400759
SOURCE (Princeton)GBP1P1
Genetics Home Reference (NIH)GBP1P1
Genomic and cartography
GoldenPath hg38 (UCSC)GBP1P1  -     chr1:89407679-89424934 +  1p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GBP1P1  -     1p22.2   [Description]    (hg19-Feb_2009)
EnsemblGBP1P1 - 1p22.2 [CytoView hg19]  GBP1P1 - 1p22.2 [CytoView hg38]
Mapping of homologs : NCBIGBP1P1 [Mapview hg19]  GBP1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK309962
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GBP1P1
Cluster EST : UnigeneHs.661968 [ NCBI ]
CGAP (NCI)Hs.661968
Alternative Splicing GalleryENSG00000225492
Gene ExpressionGBP1P1 [ NCBI-GEO ]   GBP1P1 [ EBI - ARRAY_EXPRESS ]   GBP1P1 [ SEEK ]   GBP1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)GBP1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400759
GTEX Portal (Tissue expression)GBP1P1
Human Protein AtlasENSG00000225492-GBP1P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GBP1P1
DMDM Disease mutations400759
Blocks (Seattle)GBP1P1
Human Protein Atlas [tissue]ENSG00000225492-GBP1P1 [tissue]
IPIIPI00980210   
Protein Interaction databases
FunCoupENSG00000225492
BioGRIDGBP1P1
STRING (EMBL)GBP1P1
ZODIACGBP1P1
Ontologies - Pathways
Huge Navigator GBP1P1 [HugePedia]
snp3D : Map Gene to Disease400759
BioCentury BCIQGBP1P1
ClinGenGBP1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400759
Clinical trialGBP1P1
Miscellaneous
canSAR (ICR)GBP1P1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineGBP1P1
EVEXGBP1P1
GoPubMedGBP1P1
iHOPGBP1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:15 CET 2017

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