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GBP3 (guanylate binding protein 3)

Identity

Alias_symbol (synonym)FLJ10961
Other alias-
HGNC (Hugo) GBP3
LocusID (NCBI) 2635
Atlas_Id 63726
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 89006677 and ends at 89022866 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PI4KA (22q11.21) / GBP3 (1p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GBP3   4184
Cards
Entrez_Gene (NCBI)GBP3  2635  guanylate binding protein 3
Aliases
GeneCards (Weizmann)GBP3
Ensembl hg19 (Hinxton)ENSG00000117226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117226 [Gene_View]  chr1:89006677-89022866 [Contig_View]  GBP3 [Vega]
ICGC DataPortalENSG00000117226
TCGA cBioPortalGBP3
AceView (NCBI)GBP3
Genatlas (Paris)GBP3
WikiGenes2635
SOURCE (Princeton)GBP3
Genetics Home Reference (NIH)GBP3
Genomic and cartography
GoldenPath hg38 (UCSC)GBP3  -     chr1:89006677-89022866 -  1p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GBP3  -     1p22.2   [Description]    (hg19-Feb_2009)
EnsemblGBP3 - 1p22.2 [CytoView hg19]  GBP3 - 1p22.2 [CytoView hg38]
Mapping of homologs : NCBIGBP3 [Mapview hg19]  GBP3 [Mapview hg38]
OMIM600413   
Gene and transcription
Genbank (Entrez)AK001823 AK309096 AL136680 BC017992 BC063819
RefSeq transcript (Entrez)NM_001319179 NM_001319180 NM_001319181 NM_018284
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GBP3
Cluster EST : UnigeneHs.720167 [ NCBI ]
CGAP (NCI)Hs.720167
Alternative Splicing GalleryENSG00000117226
Gene ExpressionGBP3 [ NCBI-GEO ]   GBP3 [ EBI - ARRAY_EXPRESS ]   GBP3 [ SEEK ]   GBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)GBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2635
GTEX Portal (Tissue expression)GBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0R5
Splice isoforms : SwissVarQ9H0R5
PhosPhoSitePlusQ9H0R5
Domaine pattern : Prosite (Expaxy)G_GB1_RHD3 (PS51715)   
Domains : Interpro (EBI)G_GB1_RHD3_dom    Guanylate-bd_C    Guanylate-bd_N    P-loop_NTPase   
Domain families : Pfam (Sanger)GBP (PF02263)    GBP_C (PF02841)   
Domain families : Pfam (NCBI)pfam02263    pfam02841   
Conserved Domain (NCBI)GBP3
DMDM Disease mutations2635
Blocks (Seattle)GBP3
SuperfamilyQ9H0R5
Human Protein AtlasENSG00000117226
Peptide AtlasQ9H0R5
HPRD02683
IPIIPI00798277   IPI00026544   IPI00978047   IPI00440513   IPI00385836   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0R5
IntAct (EBI)Q9H0R5
FunCoupENSG00000117226
BioGRIDGBP3
STRING (EMBL)GBP3
ZODIACGBP3
Ontologies - Pathways
QuickGOQ9H0R5
Ontology : AmiGOGolgi membrane  GTPase activity  protein binding  GTP binding  perinuclear region of cytoplasm  defense response to virus  
Ontology : EGO-EBIGolgi membrane  GTPase activity  protein binding  GTP binding  perinuclear region of cytoplasm  defense response to virus  
NDEx NetworkGBP3
Atlas of Cancer Signalling NetworkGBP3
Wikipedia pathwaysGBP3
Orthology - Evolution
OrthoDB2635
GeneTree (enSembl)ENSG00000117226
Phylogenetic Trees/Animal Genes : TreeFamGBP3
HOVERGENQ9H0R5
HOGENOMQ9H0R5
Homologs : HomoloGeneGBP3
Homology/Alignments : Family Browser (UCSC)GBP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GBP3
dbVarGBP3
ClinVarGBP3
1000_GenomesGBP3 
Exome Variant ServerGBP3
ExAC (Exome Aggregation Consortium)GBP3 (select the gene name)
Genetic variants : HAPMAP2635
Genomic Variants (DGV)GBP3 [DGVbeta]
DECIPHERGBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGBP3 
Mutations
ICGC Data PortalGBP3 
TCGA Data PortalGBP3 
Broad Tumor PortalGBP3
OASIS PortalGBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GBP3
DgiDB (Drug Gene Interaction Database)GBP3
DoCM (Curated mutations)GBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GBP3 (select a term)
intoGenGBP3
Cancer3DGBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600413   
Orphanet
MedgenGBP3
Genetic Testing Registry GBP3
NextProtQ9H0R5 [Medical]
TSGene2635
GENETestsGBP3
Target ValidationGBP3
Huge Navigator GBP3 [HugePedia]
snp3D : Map Gene to Disease2635
BioCentury BCIQGBP3
ClinGenGBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2635
Chemical/Pharm GKB GenePA28598
Clinical trialGBP3
Miscellaneous
canSAR (ICR)GBP3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGBP3
EVEXGBP3
GoPubMedGBP3
iHOPGBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:16:05 CEST 2017

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