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GBP7 (guanylate binding protein 7)

Identity

Alias_symbol (synonym)FLJ38822
GBP4L
Other alias
HGNC (Hugo) GBP7
LocusID (NCBI) 388646
Atlas_Id 63729
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 89131751 and ends at 89176040 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GBP7   29606
Cards
Entrez_Gene (NCBI)GBP7  388646  guanylate binding protein 7
AliasesGBP4L
GeneCards (Weizmann)GBP7
Ensembl hg19 (Hinxton)ENSG00000213512 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213512 [Gene_View]  chr1:89131751-89176040 [Contig_View]  GBP7 [Vega]
ICGC DataPortalENSG00000213512
TCGA cBioPortalGBP7
AceView (NCBI)GBP7
Genatlas (Paris)GBP7
WikiGenes388646
SOURCE (Princeton)GBP7
Genetics Home Reference (NIH)GBP7
Genomic and cartography
GoldenPath hg38 (UCSC)GBP7  -     chr1:89131751-89176040 -  1p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GBP7  -     1p22.2   [Description]    (hg19-Feb_2009)
EnsemblGBP7 - 1p22.2 [CytoView hg19]  GBP7 - 1p22.2 [CytoView hg38]
Mapping of homologs : NCBIGBP7 [Mapview hg19]  GBP7 [Mapview hg38]
OMIM612468   
Gene and transcription
Genbank (Entrez)AK096141 BC156123 BC157015
RefSeq transcript (Entrez)NM_207398
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GBP7
Cluster EST : UnigeneHs.591450 [ NCBI ]
CGAP (NCI)Hs.591450
Alternative Splicing GalleryENSG00000213512
Gene ExpressionGBP7 [ NCBI-GEO ]   GBP7 [ EBI - ARRAY_EXPRESS ]   GBP7 [ SEEK ]   GBP7 [ MEM ]
Gene Expression Viewer (FireBrowse)GBP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388646
GTEX Portal (Tissue expression)GBP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8V2
Splice isoforms : SwissVarQ8N8V2
PhosPhoSitePlusQ8N8V2
Domaine pattern : Prosite (Expaxy)G_GB1_RHD3 (PS51715)   
Domains : Interpro (EBI)G_GB1_RHD3_dom    Guanylate-bd_C    Guanylate-bd_N    P-loop_NTPase   
Domain families : Pfam (Sanger)GBP (PF02263)    GBP_C (PF02841)   
Domain families : Pfam (NCBI)pfam02263    pfam02841   
Conserved Domain (NCBI)GBP7
DMDM Disease mutations388646
Blocks (Seattle)GBP7
SuperfamilyQ8N8V2
Human Protein AtlasENSG00000213512
Peptide AtlasQ8N8V2
HPRD13432
IPIIPI00298353   IPI00917172   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8V2
IntAct (EBI)Q8N8V2
FunCoupENSG00000213512
BioGRIDGBP7
STRING (EMBL)GBP7
ZODIACGBP7
Ontologies - Pathways
QuickGOQ8N8V2
Ontology : AmiGOGTPase activity  GTP binding  membrane  
Ontology : EGO-EBIGTPase activity  GTP binding  membrane  
NDEx NetworkGBP7
Atlas of Cancer Signalling NetworkGBP7
Wikipedia pathwaysGBP7
Orthology - Evolution
OrthoDB388646
GeneTree (enSembl)ENSG00000213512
Phylogenetic Trees/Animal Genes : TreeFamGBP7
HOVERGENQ8N8V2
HOGENOMQ8N8V2
Homologs : HomoloGeneGBP7
Homology/Alignments : Family Browser (UCSC)GBP7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGBP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GBP7
dbVarGBP7
ClinVarGBP7
1000_GenomesGBP7 
Exome Variant ServerGBP7
ExAC (Exome Aggregation Consortium)GBP7 (select the gene name)
Genetic variants : HAPMAP388646
Genomic Variants (DGV)GBP7 [DGVbeta]
DECIPHERGBP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGBP7 
Mutations
ICGC Data PortalGBP7 
TCGA Data PortalGBP7 
Broad Tumor PortalGBP7
OASIS PortalGBP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGBP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGBP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GBP7
DgiDB (Drug Gene Interaction Database)GBP7
DoCM (Curated mutations)GBP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GBP7 (select a term)
intoGenGBP7
Cancer3DGBP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612468   
Orphanet
MedgenGBP7
Genetic Testing Registry GBP7
NextProtQ8N8V2 [Medical]
TSGene388646
GENETestsGBP7
Target ValidationGBP7
Huge Navigator GBP7 [HugePedia]
snp3D : Map Gene to Disease388646
BioCentury BCIQGBP7
ClinGenGBP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388646
Chemical/Pharm GKB GenePA142671744
Clinical trialGBP7
Miscellaneous
canSAR (ICR)GBP7 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGBP7
EVEXGBP7
GoPubMedGBP7
iHOPGBP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:15 CEST 2017

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