Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GBX1 (gastrulation brain homeobox 1)

Identity

Alias_namesgastrulation brain homeo box 1
Other aliasHuh-17
HGNC (Hugo) GBX1
LocusID (NCBI) 2636
Atlas_Id 63730
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151148589 and ends at 151167548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GBX1 (7q36.1) / COL4A6 (Xq22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GBX1   4185
Cards
Entrez_Gene (NCBI)GBX1  2636  gastrulation brain homeobox 1
AliasesHuh-17
GeneCards (Weizmann)GBX1
Ensembl hg19 (Hinxton)ENSG00000164900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164900 [Gene_View]  chr7:151148589-151167548 [Contig_View]  GBX1 [Vega]
ICGC DataPortalENSG00000164900
TCGA cBioPortalGBX1
AceView (NCBI)GBX1
Genatlas (Paris)GBX1
WikiGenes2636
SOURCE (Princeton)GBX1
Genetics Home Reference (NIH)GBX1
Genomic and cartography
GoldenPath hg38 (UCSC)GBX1  -     chr7:151148589-151167548 -  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GBX1  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblGBX1 - 7q36.1 [CytoView hg19]  GBX1 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGBX1 [Mapview hg19]  GBX1 [Mapview hg38]
OMIM603354   
Gene and transcription
Genbank (Entrez)BC160003
RefSeq transcript (Entrez)NM_001098834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GBX1
Alternative Splicing GalleryENSG00000164900
Gene ExpressionGBX1 [ NCBI-GEO ]   GBX1 [ EBI - ARRAY_EXPRESS ]   GBX1 [ SEEK ]   GBX1 [ MEM ]
Gene Expression Viewer (FireBrowse)GBX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2636
GTEX Portal (Tissue expression)GBX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14549   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14549  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14549
Splice isoforms : SwissVarQ14549
PhosPhoSitePlusQ14549
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)GBX-1    Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)GBX1
DMDM Disease mutations2636
Blocks (Seattle)GBX1
PDB (SRS)2M34    2ME0    2ME6    2N8G   
PDB (PDBSum)2M34    2ME0    2ME6    2N8G   
PDB (IMB)2M34    2ME0    2ME6    2N8G   
PDB (RSDB)2M34    2ME0    2ME6    2N8G   
Structural Biology KnowledgeBase2M34    2ME0    2ME6    2N8G   
SCOP (Structural Classification of Proteins)2M34    2ME0    2ME6    2N8G   
CATH (Classification of proteins structures)2M34    2ME0    2ME6    2N8G   
SuperfamilyQ14549
Human Protein AtlasENSG00000164900
Peptide AtlasQ14549
IPIIPI00556582   IPI01021353   
Protein Interaction databases
DIP (DOE-UCLA)Q14549
IntAct (EBI)Q14549
FunCoupENSG00000164900
BioGRIDGBX1
STRING (EMBL)GBX1
ZODIACGBX1
Ontologies - Pathways
QuickGOQ14549
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  adult walking behavior  proprioception  spinal cord motor neuron differentiation  sequence-specific DNA binding  neuron fate commitment  sensory neuron axon guidance  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  adult walking behavior  proprioception  spinal cord motor neuron differentiation  sequence-specific DNA binding  neuron fate commitment  sensory neuron axon guidance  
NDEx NetworkGBX1
Atlas of Cancer Signalling NetworkGBX1
Wikipedia pathwaysGBX1
Orthology - Evolution
OrthoDB2636
GeneTree (enSembl)ENSG00000164900
Phylogenetic Trees/Animal Genes : TreeFamGBX1
HOVERGENQ14549
HOGENOMQ14549
Homologs : HomoloGeneGBX1
Homology/Alignments : Family Browser (UCSC)GBX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGBX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GBX1
dbVarGBX1
ClinVarGBX1
1000_GenomesGBX1 
Exome Variant ServerGBX1
ExAC (Exome Aggregation Consortium)GBX1 (select the gene name)
Genetic variants : HAPMAP2636
Genomic Variants (DGV)GBX1 [DGVbeta]
DECIPHERGBX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGBX1 
Mutations
ICGC Data PortalGBX1 
TCGA Data PortalGBX1 
Broad Tumor PortalGBX1
OASIS PortalGBX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGBX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGBX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GBX1
DgiDB (Drug Gene Interaction Database)GBX1
DoCM (Curated mutations)GBX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GBX1 (select a term)
intoGenGBX1
Cancer3DGBX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603354   
Orphanet
MedgenGBX1
Genetic Testing Registry GBX1
NextProtQ14549 [Medical]
TSGene2636
GENETestsGBX1
Target ValidationGBX1
Huge Navigator GBX1 [HugePedia]
snp3D : Map Gene to Disease2636
BioCentury BCIQGBX1
ClinGenGBX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2636
Chemical/Pharm GKB GenePA28599
Clinical trialGBX1
Miscellaneous
canSAR (ICR)GBX1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGBX1
EVEXGBX1
GoPubMedGBX1
iHOPGBX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:16 CEST 2017

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