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GCC1 (GRIP and coiled-coil domain containing 1)

Identity

Alias_namesgolgi coiled-coil 1
Alias_symbol (synonym)FLJ22035
GCC88
GCC1P
MGC20706
Other alias
HGNC (Hugo) GCC1
LocusID (NCBI) 79571
Atlas_Id 56391
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 127580628 and ends at 127585600 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GCC1   19095
Cards
Entrez_Gene (NCBI)GCC1  79571  GRIP and coiled-coil domain containing 1
AliasesGCC1P; GCC88
GeneCards (Weizmann)GCC1
Ensembl hg19 (Hinxton)ENSG00000179562 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179562 [Gene_View]  chr7:127580628-127585600 [Contig_View]  GCC1 [Vega]
ICGC DataPortalENSG00000179562
TCGA cBioPortalGCC1
AceView (NCBI)GCC1
Genatlas (Paris)GCC1
WikiGenes79571
SOURCE (Princeton)GCC1
Genetics Home Reference (NIH)GCC1
Genomic and cartography
GoldenPath hg38 (UCSC)GCC1  -     chr7:127580628-127585600 -  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCC1  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblGCC1 - 7q32.1 [CytoView hg19]  GCC1 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIGCC1 [Mapview hg19]  GCC1 [Mapview hg38]
OMIM607418   
Gene and transcription
Genbank (Entrez)AF525417 AK025688 AK092878 AK315472 AL832833
RefSeq transcript (Entrez)NM_024523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCC1
Cluster EST : UnigeneHs.521168 [ NCBI ]
CGAP (NCI)Hs.521168
Alternative Splicing GalleryENSG00000179562
Gene ExpressionGCC1 [ NCBI-GEO ]   GCC1 [ EBI - ARRAY_EXPRESS ]   GCC1 [ SEEK ]   GCC1 [ MEM ]
Gene Expression Viewer (FireBrowse)GCC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79571
GTEX Portal (Tissue expression)GCC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CN9
Splice isoforms : SwissVarQ96CN9
PhosPhoSitePlusQ96CN9
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)   
Domains : Interpro (EBI)GRIP_dom   
Domain families : Pfam (Sanger)GRIP (PF01465)   
Domain families : Pfam (NCBI)pfam01465   
Domain families : Smart (EMBL)Grip (SM00755)  
Conserved Domain (NCBI)GCC1
DMDM Disease mutations79571
Blocks (Seattle)GCC1
SuperfamilyQ96CN9
Human Protein AtlasENSG00000179562
Peptide AtlasQ96CN9
HPRD07599
IPIIPI00165138   
Protein Interaction databases
DIP (DOE-UCLA)Q96CN9
IntAct (EBI)Q96CN9
FunCoupENSG00000179562
BioGRIDGCC1
STRING (EMBL)GCC1
ZODIACGCC1
Ontologies - Pathways
QuickGOQ96CN9
Ontology : AmiGOprotein targeting to Golgi  Golgi membrane  protein binding  Golgi apparatus  Golgi apparatus  cytosol  cytosol  plasma membrane  
Ontology : EGO-EBIprotein targeting to Golgi  Golgi membrane  protein binding  Golgi apparatus  Golgi apparatus  cytosol  cytosol  plasma membrane  
NDEx NetworkGCC1
Atlas of Cancer Signalling NetworkGCC1
Wikipedia pathwaysGCC1
Orthology - Evolution
OrthoDB79571
GeneTree (enSembl)ENSG00000179562
Phylogenetic Trees/Animal Genes : TreeFamGCC1
HOVERGENQ96CN9
HOGENOMQ96CN9
Homologs : HomoloGeneGCC1
Homology/Alignments : Family Browser (UCSC)GCC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCC1
dbVarGCC1
ClinVarGCC1
1000_GenomesGCC1 
Exome Variant ServerGCC1
ExAC (Exome Aggregation Consortium)GCC1 (select the gene name)
Genetic variants : HAPMAP79571
Genomic Variants (DGV)GCC1 [DGVbeta]
DECIPHERGCC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCC1 
Mutations
ICGC Data PortalGCC1 
TCGA Data PortalGCC1 
Broad Tumor PortalGCC1
OASIS PortalGCC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGCC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGCC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GCC1
DgiDB (Drug Gene Interaction Database)GCC1
DoCM (Curated mutations)GCC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCC1 (select a term)
intoGenGCC1
Cancer3DGCC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607418   
Orphanet
MedgenGCC1
Genetic Testing Registry GCC1
NextProtQ96CN9 [Medical]
TSGene79571
GENETestsGCC1
Huge Navigator GCC1 [HugePedia]
snp3D : Map Gene to Disease79571
BioCentury BCIQGCC1
ClinGenGCC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79571
Chemical/Pharm GKB GenePA38796
Clinical trialGCC1
Miscellaneous
canSAR (ICR)GCC1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCC1
EVEXGCC1
GoPubMedGCC1
iHOPGCC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 12:16:59 CEST 2017

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