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GCFC2 (GC-rich sequence DNA-binding factor 2)

Identity

Alias_namesTCF9
C2orf3
transcription factor 9 (binds GC-rich sequences)
chromosome 2 open reading frame 3
Alias_symbol (synonym)DNABF
GCF
Other alias
HGNC (Hugo) GCFC2
LocusID (NCBI) 6936
Atlas_Id 54327
Location 2p12  [Link to chromosome band 2p12]
Location_base_pair Starts at 75889832 and ends at 75937732 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GCFC2 (2p12) / GCFC2 (2p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GCFC2   1317
Cards
Entrez_Gene (NCBI)GCFC2  6936  GC-rich sequence DNA-binding factor 2
AliasesC2orf3; DNABF; GCF; TCF9
GeneCards (Weizmann)GCFC2
Ensembl hg19 (Hinxton)ENSG00000005436 [Gene_View]  chr2:75889832-75937732 [Contig_View]  GCFC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000005436 [Gene_View]  chr2:75889832-75937732 [Contig_View]  GCFC2 [Vega]
ICGC DataPortalENSG00000005436
TCGA cBioPortalGCFC2
AceView (NCBI)GCFC2
Genatlas (Paris)GCFC2
WikiGenes6936
SOURCE (Princeton)GCFC2
Genetics Home Reference (NIH)GCFC2
Genomic and cartography
GoldenPath hg19 (UCSC)GCFC2  -     chr2:75889832-75937732 -  2p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GCFC2  -     2p12   [Description]    (hg38-Dec_2013)
EnsemblGCFC2 - 2p12 [CytoView hg19]  GCFC2 - 2p12 [CytoView hg38]
Mapping of homologs : NCBIGCFC2 [Mapview hg19]  GCFC2 [Mapview hg38]
OMIM189901   
Gene and transcription
Genbank (Entrez)AB026911 AK097564 BC000853 BC064559 BG506463
RefSeq transcript (Entrez)NM_001201334 NM_001201335 NM_003203
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)GCFC2
Cluster EST : UnigeneHs.710597 [ NCBI ]
CGAP (NCI)Hs.710597
Alternative Splicing GalleryENSG00000005436
Gene ExpressionGCFC2 [ NCBI-GEO ]   GCFC2 [ EBI - ARRAY_EXPRESS ]   GCFC2 [ SEEK ]   GCFC2 [ MEM ]
Gene Expression Viewer (FireBrowse)GCFC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6936
GTEX Portal (Tissue expression)GCFC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16383   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16383  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16383
Splice isoforms : SwissVarP16383
PhosPhoSitePlusP16383
Domains : Interpro (EBI)GCFC    GCFC_dom   
Domain families : Pfam (Sanger)GCFC (PF07842)   
Domain families : Pfam (NCBI)pfam07842   
Conserved Domain (NCBI)GCFC2
DMDM Disease mutations6936
Blocks (Seattle)GCFC2
SuperfamilyP16383
Human Protein AtlasENSG00000005436
Peptide AtlasP16383
HPRD01791
IPIIPI00418340   IPI00807475   IPI00975564   IPI00916468   IPI00916593   
Protein Interaction databases
DIP (DOE-UCLA)P16383
IntAct (EBI)P16383
FunCoupENSG00000005436
BioGRIDGCFC2
STRING (EMBL)GCFC2
ZODIACGCFC2
Ontologies - Pathways
QuickGOP16383
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  spliceosomal complex assembly  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  U2-type post-mRNA release spliceosomal complex  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  spliceosomal complex assembly  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  U2-type post-mRNA release spliceosomal complex  
NDEx NetworkGCFC2
Atlas of Cancer Signalling NetworkGCFC2
Wikipedia pathwaysGCFC2
Orthology - Evolution
OrthoDB6936
GeneTree (enSembl)ENSG00000005436
Phylogenetic Trees/Animal Genes : TreeFamGCFC2
HOVERGENP16383
HOGENOMP16383
Homologs : HomoloGeneGCFC2
Homology/Alignments : Family Browser (UCSC)GCFC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCFC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCFC2
dbVarGCFC2
ClinVarGCFC2
1000_GenomesGCFC2 
Exome Variant ServerGCFC2
ExAC (Exome Aggregation Consortium)GCFC2 (select the gene name)
Genetic variants : HAPMAP6936
Genomic Variants (DGV)GCFC2 [DGVbeta]
DECIPHER (Syndromes)2:75889832-75937732  ENSG00000005436
CONAN: Copy Number AnalysisGCFC2 
Mutations
ICGC Data PortalGCFC2 
TCGA Data PortalGCFC2 
Broad Tumor PortalGCFC2
OASIS PortalGCFC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGCFC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GCFC2
DgiDB (Drug Gene Interaction Database)GCFC2
DoCM (Curated mutations)GCFC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCFC2 (select a term)
intoGenGCFC2
Cancer3DGCFC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM189901   
Orphanet
MedgenGCFC2
Genetic Testing Registry GCFC2
NextProtP16383 [Medical]
TSGene6936
GENETestsGCFC2
Huge Navigator GCFC2 [HugePedia]
snp3D : Map Gene to Disease6936
BioCentury BCIQGCFC2
ClinGenGCFC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6936
Chemical/Pharm GKB GenePA25892
Clinical trialGCFC2
Miscellaneous
canSAR (ICR)GCFC2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCFC2
EVEXGCFC2
GoPubMedGCFC2
iHOPGCFC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:11 CET 2017

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