Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GCM1 (glial cells missing homolog 1 (Drosophila))

Identity

Other namesGCMA
hGCMa
HGNC (Hugo) GCM1
LocusID (NCBI) 8521
Location 6p12.1
Location_base_pair Starts at 52991760 and ends at 53013624 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)GCM1   4197
Entrez_Gene (NCBI)GCM1  8521  glial cells missing homolog 1 (Drosophila)
Cards
GeneCards (Weizmann)GCM1
Ensembl (Hinxton)ENSG00000137270 [Gene_View]  chr6:52991760-53013624 [Contig_View]  GCM1 [Vega]
AceView (NCBI)GCM1
Genatlas (Paris)GCM1
SOURCE (Stanford)NM_003643
Genomic and cartography
GoldenPath (UCSC)GCM1  -  6p12.1   chr6:52991760-53013624 -  6p12.1   [Description]    (hg19-Feb_2009)
EnsemblGCM1 - 6p12.1 [CytoView]
Mapping of homologs : NCBIGCM1 [Mapview]
OMIM603715   
Gene and transcription
Genbank (Entrez)AB026493 AB041714 AI219562 AK309881 BC096288
RefSeq transcript (SRS)NM_003643
RefSeq transcript (Entrez)NM_003643
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004078026
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004078026
Consensus coding sequences : CCDS (NCBI)GCM1
Cluster EST : UnigeneHs.28346 [ SRS ] Hs.28346 [ NCBI ]
CGAP (NCI)Hs.28346
Alternative Splicing : Fast-db (Paris)GSHG0026687
Alternative Splicing GalleryENSG00000137270
Gene ExpressionGCM1 [ NCBI-GEO ]   GCM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP62 (SRS) Q9NP62 (Uniprot)
NextProtQ9NP62
With graphics : InterProQ9NP62
Splice isoforms : SwissVarQ9NP62(Swissvar)
Domaine pattern : Prosite (SRS)GCM (PS50807)   
Domaine pattern : Prosite (Expaxy)GCM (PS50807)   
Domains : Interpro (SRS)Tscrpt_reg_GCM_motif   
Domains : Interpro (EBI)Tscrpt_reg_GCM_motif   
Related proteins : CluSTrQ9NP62
Domain families : Pfam (SRS)GCM (PF03615)   
Domain families : Pfam (Sanger)GCM (PF03615)   
Domain families : Pfam (NCBI)pfam03615   
Domain structure : Prodom (Prabi Lyon)GCM_motif (PD014393)   
DMDM8521
Blocks (Seattle)Q9NP62
Human Protein AtlasENSG00000137270
HPRD04757
IPIIPI00413627   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP62
IntAct (EBI)Q9NP62
FunCoupENSG00000137270
REACTOMEGCM1
Protein Interaction Database8521
BioGRIDGCM1
InParanoidQ9NP62
Interologous Interaction database Q9NP62
IntegromeDBGCM1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GCM1
SNP (GeneSNP Utah)GCM1
SNP : HGBaseGCM1
Genetic variants : HAPMAPGCM1
Somatic Mutations in Cancer : COSMICGCM1 
CONAN: Copy Number AnalysisGCM1 
Mutations and Diseases : HGMDGCM1
OMIM603715   
GENETests603715   
Disease Genetic AssociationGCM1
Huge Navigator GCM1 [HugePedia]  GCM1 [HugeCancerGEM]
Genomic VariantsGCM1  GCM1 [DGVbeta]
snp3D : Map Gene to Disease8521
General knowledge
Homologs : HomoloGeneGCM1
Homology/Alignments : Family Browser (UCSC)GCM1
Phylogenetic Trees/Animal Genes : TreeFamGCM1
Chemical/Protein Interactions : CTD8521
Chemical/Pharm GKB GenePA28614
Clinical trialGCM1
Cancer Resource (Charite)ENSG00000137270
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  transcription, DNA-dependent  regulation of transcription, DNA-dependent  transcription factor binding  zinc ion binding  anatomical structure morphogenesis  metal ion binding  astrocyte fate commitment  branching involved in labyrinthine layer morphogenesis  cell differentiation involved in embryonic placenta development  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  transcription, DNA-dependent  regulation of transcription, DNA-dependent  transcription factor binding  zinc ion binding  anatomical structure morphogenesis  metal ion binding  astrocyte fate commitment  branching involved in labyrinthine layer morphogenesis  cell differentiation involved in embryonic placenta development  
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
PubGeneGCM1
iHOPGCM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:47:39 CEST 2013
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