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GCN1 (GCN1 eIF2 alpha kinase activator homolog)

Identity

Alias_namesGCN1L1
GCN1 (general control of amino-acid synthesis 1, yeast)-like 1
GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
Alias_symbol (synonym)KIAA0219
GCN1L
Other aliasPRIC295
HGNC (Hugo) GCN1
LocusID (NCBI) 10985
Atlas_Id 77727
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 120565014 and ends at 120632513 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF5B (2q11.2) / GCN1 (12q24.23)GCN1 (12q24.23) / 12p13.32 ()GCN1 (12q24.23) / ADGRV1 (5q14.3)
GCN1 (12q24.23) / CCND2 (12p13.32)GCN1 (12q24.23) / GCN1 (12q24.23)GCN1 (12q24.23) / KIAA0825 (5q15)
GCN1 (12q24.23) / LAIR1 (19q13.42)GCN1 (12q24.23) / MSI1 (12q24.31)GCN1 (12q24.23) / PLA2G1B (12q24.31)
GCN1 (12q24.23) / STAB1 (3p21.1)GCN1 (12q24.23) / TXNL4A (18q23)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GCN1   4199
Cards
Entrez_Gene (NCBI)GCN1  10985  GCN1 eIF2 alpha kinase activator homolog
AliasesGCN1L; GCN1L1; PRIC295
GeneCards (Weizmann)GCN1
Ensembl hg19 (Hinxton)ENSG00000089154 [Gene_View]  chr12:120565014-120632513 [Contig_View]  GCN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000089154 [Gene_View]  chr12:120565014-120632513 [Contig_View]  GCN1 [Vega]
ICGC DataPortalENSG00000089154
TCGA cBioPortalGCN1
AceView (NCBI)GCN1
Genatlas (Paris)GCN1
WikiGenes10985
SOURCE (Princeton)GCN1
Genetics Home Reference (NIH)GCN1
Genomic and cartography
GoldenPath hg19 (UCSC)GCN1  -     chr12:120565014-120632513 -  12q24.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GCN1  -     12q24.23   [Description]    (hg38-Dec_2013)
EnsemblGCN1 - 12q24.23 [CytoView hg19]  GCN1 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBIGCN1 [Mapview hg19]  GCN1 [Mapview hg38]
OMIM605614   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_006836
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)GCN1
Cluster EST : UnigeneHs.298716 [ NCBI ]
CGAP (NCI)Hs.298716
Alternative Splicing GalleryENSG00000089154
Gene ExpressionGCN1 [ NCBI-GEO ]   GCN1 [ EBI - ARRAY_EXPRESS ]   GCN1 [ SEEK ]   GCN1 [ MEM ]
Gene Expression Viewer (FireBrowse)GCN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10985
GTEX Portal (Tissue expression)GCN1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GCN1
DMDM Disease mutations10985
Blocks (Seattle)GCN1
Human Protein AtlasENSG00000089154
HPRD16127
IPIIPI00001159   
Protein Interaction databases
FunCoupENSG00000089154
BioGRIDGCN1
STRING (EMBL)GCN1
ZODIACGCN1
Ontologies - Pathways
Huge Navigator GCN1 [HugePedia]
snp3D : Map Gene to Disease10985
BioCentury BCIQGCN1
ClinGenGCN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10985
Chemical/Pharm GKB GenePA28616
Clinical trialGCN1
Miscellaneous
canSAR (ICR)GCN1 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCN1
EVEXGCN1
GoPubMedGCN1
iHOPGCN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:55 CET 2017

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