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GCNA (germ cell nuclear acidic peptidase)

Identity

Other aliasACRC
NAAR1
HGNC (Hugo) GCNA
LocusID (NCBI) 93953
Atlas_Id 78641
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71578024 and ends at 71613583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GCNA   15805
Cards
Entrez_Gene (NCBI)GCNA  93953  germ cell nuclear acidic peptidase
AliasesACRC; NAAR1
GeneCards (Weizmann)GCNA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:71578024-71613583 [Contig_View]  GCNA [Vega]
TCGA cBioPortalGCNA
AceView (NCBI)GCNA
Genatlas (Paris)GCNA
WikiGenes93953
SOURCE (Princeton)GCNA
Genetics Home Reference (NIH)GCNA
Genomic and cartography
GoldenPath hg38 (UCSC)GCNA  -     chrX:71578024-71613583 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCNA  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblGCNA - Xq13.1 [CytoView hg19]  GCNA - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIGCNA [Mapview hg19]  GCNA [Mapview hg38]
OMIM300369   
Gene and transcription
Genbank (Entrez)AJ311392 AK097433 AK127607 BC136259 DB073623
RefSeq transcript (Entrez)NM_052957
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCNA
Cluster EST : UnigeneHs.135167 [ NCBI ]
CGAP (NCI)Hs.135167
Gene ExpressionGCNA [ NCBI-GEO ]   GCNA [ EBI - ARRAY_EXPRESS ]   GCNA [ SEEK ]   GCNA [ MEM ]
Gene Expression Viewer (FireBrowse)GCNA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93953
GTEX Portal (Tissue expression)GCNA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QF7
Splice isoforms : SwissVarQ96QF7
PhosPhoSitePlusQ96QF7
Domains : Interpro (EBI)SprT-like_domain   
Domain families : Pfam (Sanger)SprT-like (PF10263)   
Domain families : Pfam (NCBI)pfam10263   
Domain families : Smart (EMBL)SprT (SM00731)  
Conserved Domain (NCBI)GCNA
DMDM Disease mutations93953
Blocks (Seattle)GCNA
SuperfamilyQ96QF7
Peptide AtlasQ96QF7
HPRD02298
IPIIPI00289929   
Protein Interaction databases
DIP (DOE-UCLA)Q96QF7
IntAct (EBI)Q96QF7
BioGRIDGCNA
STRING (EMBL)GCNA
ZODIACGCNA
Ontologies - Pathways
QuickGOQ96QF7
Ontology : AmiGOnucleus  nucleus  DNA demethylation  
Ontology : EGO-EBInucleus  nucleus  DNA demethylation  
NDEx NetworkGCNA
Atlas of Cancer Signalling NetworkGCNA
Wikipedia pathwaysGCNA
Orthology - Evolution
OrthoDB93953
Phylogenetic Trees/Animal Genes : TreeFamGCNA
HOVERGENQ96QF7
HOGENOMQ96QF7
Homologs : HomoloGeneGCNA
Homology/Alignments : Family Browser (UCSC)GCNA
Gene fusions - Rearrangements
Tumor Fusion PortalGCNA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCNA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCNA
dbVarGCNA
ClinVarGCNA
1000_GenomesGCNA 
Exome Variant ServerGCNA
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP93953
Genomic Variants (DGV)GCNA [DGVbeta]
DECIPHERGCNA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCNA 
Mutations
ICGC Data PortalGCNA 
TCGA Data PortalGCNA 
Broad Tumor PortalGCNA
OASIS PortalGCNA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGCNA
BioMutasearch GCNA
DgiDB (Drug Gene Interaction Database)GCNA
DoCM (Curated mutations)GCNA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCNA (select a term)
intoGenGCNA
Cancer3DGCNA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300369   
Orphanet
DisGeNETGCNA
MedgenGCNA
Genetic Testing Registry GCNA
NextProtQ96QF7 [Medical]
TSGene93953
GENETestsGCNA
Target ValidationGCNA
Huge Navigator GCNA [HugePedia]
snp3D : Map Gene to Disease93953
BioCentury BCIQGCNA
ClinGenGCNA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93953
Chemical/Pharm GKB GenePA24453
Clinical trialGCNA
Miscellaneous
canSAR (ICR)GCNA (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCNA
EVEXGCNA
GoPubMedGCNA
iHOPGCNA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:40 CET 2017

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