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GCNT7 (glucosaminyl (N-acetyl) transferase family member 7)

Identity

Alias_namesC20orf105
chromosome 20 open reading frame 105
Alias_symbol (synonym)dJ1153D9.2
Other aliasgcnt
HGNC (Hugo) GCNT7
LocusID (NCBI) 140687
Atlas_Id 63737
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 56491492 and ends at 56525925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM107B (10p13) / GCNT7 (20q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GCNT7   16099
Cards
Entrez_Gene (NCBI)GCNT7  140687  glucosaminyl (N-acetyl) transferase family member 7
AliasesC20orf105; dJ1153D9.2; gcnt
GeneCards (Weizmann)GCNT7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:56491492-56525925 [Contig_View]  GCNT7 [Vega]
TCGA cBioPortalGCNT7
AceView (NCBI)GCNT7
Genatlas (Paris)GCNT7
WikiGenes140687
SOURCE (Princeton)GCNT7
Genetics Home Reference (NIH)GCNT7
Genomic and cartography
GoldenPath hg38 (UCSC)GCNT7  -     chr20:56491492-56525925 -  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCNT7  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblGCNT7 - 20q13.31 [CytoView hg19]  GCNT7 - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIGCNT7 [Mapview hg19]  GCNT7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131203
RefSeq transcript (Entrez)NM_080615
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCNT7
Cluster EST : UnigeneHs.655916 [ NCBI ]
CGAP (NCI)Hs.655916
Gene ExpressionGCNT7 [ NCBI-GEO ]   GCNT7 [ EBI - ARRAY_EXPRESS ]   GCNT7 [ SEEK ]   GCNT7 [ MEM ]
Gene Expression Viewer (FireBrowse)GCNT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140687
GTEX Portal (Tissue expression)GCNT7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNI0
Splice isoforms : SwissVarQ6ZNI0
PhosPhoSitePlusQ6ZNI0
Domains : Interpro (EBI)Glyco_trans_14   
Domain families : Pfam (Sanger)Branch (PF02485)   
Domain families : Pfam (NCBI)pfam02485   
Conserved Domain (NCBI)GCNT7
DMDM Disease mutations140687
Blocks (Seattle)GCNT7
SuperfamilyQ6ZNI0
Peptide AtlasQ6ZNI0
IPIIPI00442336   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNI0
IntAct (EBI)Q6ZNI0
BioGRIDGCNT7
STRING (EMBL)GCNT7
ZODIACGCNT7
Ontologies - Pathways
QuickGOQ6ZNI0
Ontology : AmiGOGolgi membrane  protein glycosylation  acetylglucosaminyltransferase activity  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  protein glycosylation  acetylglucosaminyltransferase activity  integral component of membrane  
NDEx NetworkGCNT7
Atlas of Cancer Signalling NetworkGCNT7
Wikipedia pathwaysGCNT7
Orthology - Evolution
OrthoDB140687
Phylogenetic Trees/Animal Genes : TreeFamGCNT7
HOVERGENQ6ZNI0
HOGENOMQ6ZNI0
Homologs : HomoloGeneGCNT7
Homology/Alignments : Family Browser (UCSC)GCNT7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCNT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCNT7
dbVarGCNT7
ClinVarGCNT7
1000_GenomesGCNT7 
Exome Variant ServerGCNT7
ExAC (Exome Aggregation Consortium)GCNT7 (select the gene name)
Genetic variants : HAPMAP140687
Genomic Variants (DGV)GCNT7 [DGVbeta]
DECIPHERGCNT7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCNT7 
Mutations
ICGC Data PortalGCNT7 
TCGA Data PortalGCNT7 
Broad Tumor PortalGCNT7
OASIS PortalGCNT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGCNT7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGCNT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GCNT7
DgiDB (Drug Gene Interaction Database)GCNT7
DoCM (Curated mutations)GCNT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCNT7 (select a term)
intoGenGCNT7
Cancer3DGCNT7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGCNT7
Genetic Testing Registry GCNT7
NextProtQ6ZNI0 [Medical]
TSGene140687
GENETestsGCNT7
Target ValidationGCNT7
Huge Navigator GCNT7 [HugePedia]
snp3D : Map Gene to Disease140687
BioCentury BCIQGCNT7
ClinGenGCNT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140687
Chemical/Pharm GKB GenePA162389279
Clinical trialGCNT7
Miscellaneous
canSAR (ICR)GCNT7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCNT7
EVEXGCNT7
GoPubMedGCNT7
iHOPGCNT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:16 CEST 2017

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