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GCSAM (germinal center associated signaling and motility)

Identity

Alias_namesGCET2
germinal center expressed transcript 2
Alias_symbol (synonym)MGC40441
HGAL
Other aliasGCAT2
HGNC (Hugo) GCSAM
LocusID (NCBI) 257144
Atlas_Id 52852
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112120841 and ends at 112133305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C3orf52 (3q13.2) / GCSAM (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GCSAM   20253
Cards
Entrez_Gene (NCBI)GCSAM  257144  germinal center associated signaling and motility
AliasesGCAT2; GCET2; HGAL
GeneCards (Weizmann)GCSAM
Ensembl hg19 (Hinxton)ENSG00000174500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174500 [Gene_View]  chr3:112120841-112133305 [Contig_View]  GCSAM [Vega]
ICGC DataPortalENSG00000174500
TCGA cBioPortalGCSAM
AceView (NCBI)GCSAM
Genatlas (Paris)GCSAM
WikiGenes257144
SOURCE (Princeton)GCSAM
Genetics Home Reference (NIH)GCSAM
Genomic and cartography
GoldenPath hg38 (UCSC)GCSAM  -     chr3:112120841-112133305 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCSAM  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblGCSAM - 3q13.2 [CytoView hg19]  GCSAM - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIGCSAM [Mapview hg19]  GCSAM [Mapview hg38]
OMIM607792   
Gene and transcription
Genbank (Entrez)AA237025 AF521911 AK313368 AW576133 AY212246
RefSeq transcript (Entrez)NM_001008756 NM_001190259 NM_001190260 NM_152785
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCSAM
Cluster EST : UnigeneHs.49614 [ NCBI ]
CGAP (NCI)Hs.49614
Alternative Splicing GalleryENSG00000174500
Gene ExpressionGCSAM [ NCBI-GEO ]   GCSAM [ EBI - ARRAY_EXPRESS ]   GCSAM [ SEEK ]   GCSAM [ MEM ]
Gene Expression Viewer (FireBrowse)GCSAM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257144
GTEX Portal (Tissue expression)GCSAM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6F7
Splice isoforms : SwissVarQ8N6F7
PhosPhoSitePlusQ8N6F7
Domains : Interpro (EBI)GC_assoc_lym   
Domain families : Pfam (Sanger)HGAL (PF15666)   
Domain families : Pfam (NCBI)pfam15666   
Conserved Domain (NCBI)GCSAM
DMDM Disease mutations257144
Blocks (Seattle)GCSAM
SuperfamilyQ8N6F7
Human Protein AtlasENSG00000174500
Peptide AtlasQ8N6F7
HPRD09695
IPIIPI00167003   IPI00982658   IPI00947134   IPI00947479   IPI00946490   IPI00792653   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6F7
IntAct (EBI)Q8N6F7
FunCoupENSG00000174500
BioGRIDGCSAM
STRING (EMBL)GCSAM
ZODIACGCSAM
Ontologies - Pathways
QuickGOQ8N6F7
Ontology : AmiGOactin binding  protein binding  cytoplasm  plasma membrane  protein kinase binding  myosin II binding  regulation of B cell receptor signaling pathway  negative regulation of lymphocyte migration  
Ontology : EGO-EBIactin binding  protein binding  cytoplasm  plasma membrane  protein kinase binding  myosin II binding  regulation of B cell receptor signaling pathway  negative regulation of lymphocyte migration  
NDEx NetworkGCSAM
Atlas of Cancer Signalling NetworkGCSAM
Wikipedia pathwaysGCSAM
Orthology - Evolution
OrthoDB257144
GeneTree (enSembl)ENSG00000174500
Phylogenetic Trees/Animal Genes : TreeFamGCSAM
HOVERGENQ8N6F7
HOGENOMQ8N6F7
Homologs : HomoloGeneGCSAM
Homology/Alignments : Family Browser (UCSC)GCSAM
Gene fusions - Rearrangements
Fusion : MitelmanC3orf52/GCSAM [3q13.2/3q13.2]  [t(3;3)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCSAM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCSAM
dbVarGCSAM
ClinVarGCSAM
1000_GenomesGCSAM 
Exome Variant ServerGCSAM
ExAC (Exome Aggregation Consortium)GCSAM (select the gene name)
Genetic variants : HAPMAP257144
Genomic Variants (DGV)GCSAM [DGVbeta]
DECIPHERGCSAM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCSAM 
Mutations
ICGC Data PortalGCSAM 
TCGA Data PortalGCSAM 
Broad Tumor PortalGCSAM
OASIS PortalGCSAM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGCSAM
BioMutasearch GCSAM
DgiDB (Drug Gene Interaction Database)GCSAM
DoCM (Curated mutations)GCSAM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCSAM (select a term)
intoGenGCSAM
Cancer3DGCSAM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607792   
Orphanet
MedgenGCSAM
Genetic Testing Registry GCSAM
NextProtQ8N6F7 [Medical]
TSGene257144
GENETestsGCSAM
Target ValidationGCSAM
Huge Navigator GCSAM [HugePedia]
snp3D : Map Gene to Disease257144
BioCentury BCIQGCSAM
ClinGenGCSAM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257144
Chemical/Pharm GKB GenePA134980592
Clinical trialGCSAM
Miscellaneous
canSAR (ICR)GCSAM (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCSAM
EVEXGCSAM
GoPubMedGCSAM
iHOPGCSAM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:09:36 CEST 2017

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