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GCSAML (germinal center associated signaling and motility like)

Identity

Alias_namesC1orf150
chromosome 1 open reading frame 150
Alias_symbol (synonym)FLJ44728
Other alias
HGNC (Hugo) GCSAML
LocusID (NCBI) 148823
Atlas_Id 63739
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247507058 and ends at 247577690 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GCSAML   29583
Cards
Entrez_Gene (NCBI)GCSAML  148823  germinal center associated signaling and motility like
AliasesC1orf150
GeneCards (Weizmann)GCSAML
Ensembl hg19 (Hinxton)ENSG00000169224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169224 [Gene_View]  chr1:247507058-247577690 [Contig_View]  GCSAML [Vega]
ICGC DataPortalENSG00000169224
TCGA cBioPortalGCSAML
AceView (NCBI)GCSAML
Genatlas (Paris)GCSAML
WikiGenes148823
SOURCE (Princeton)GCSAML
Genetics Home Reference (NIH)GCSAML
Genomic and cartography
GoldenPath hg38 (UCSC)GCSAML  -     chr1:247507058-247577690 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCSAML  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblGCSAML - 1q44 [CytoView hg19]  GCSAML - 1q44 [CytoView hg38]
Mapping of homologs : NCBIGCSAML [Mapview hg19]  GCSAML [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123798 AK124520 AK126682 AK307081 AK307082
RefSeq transcript (Entrez)NM_001281834 NM_001281835 NM_001281836 NM_001281837 NM_001281838 NM_001281853 NM_145278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCSAML
Cluster EST : UnigeneHs.732113 [ NCBI ]
CGAP (NCI)Hs.732113
Alternative Splicing GalleryENSG00000169224
Gene ExpressionGCSAML [ NCBI-GEO ]   GCSAML [ EBI - ARRAY_EXPRESS ]   GCSAML [ SEEK ]   GCSAML [ MEM ]
Gene Expression Viewer (FireBrowse)GCSAML [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148823
GTEX Portal (Tissue expression)GCSAML
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQS6
Splice isoforms : SwissVarQ5JQS6
PhosPhoSitePlusQ5JQS6
Domains : Interpro (EBI)GC_assoc_lym   
Domain families : Pfam (Sanger)HGAL (PF15666)   
Domain families : Pfam (NCBI)pfam15666   
Conserved Domain (NCBI)GCSAML
DMDM Disease mutations148823
Blocks (Seattle)GCSAML
SuperfamilyQ5JQS6
Human Protein AtlasENSG00000169224
Peptide AtlasQ5JQS6
HPRD14082
IPIIPI00152169   IPI00552139   IPI00446239   IPI01011293   IPI00976252   IPI00983320   
Protein Interaction databases
DIP (DOE-UCLA)Q5JQS6
IntAct (EBI)Q5JQS6
FunCoupENSG00000169224
BioGRIDGCSAML
STRING (EMBL)GCSAML
ZODIACGCSAML
Ontologies - Pathways
QuickGOQ5JQS6
Ontology : AmiGOregulation of B cell receptor signaling pathway  regulation of lymphocyte migration  
Ontology : EGO-EBIregulation of B cell receptor signaling pathway  regulation of lymphocyte migration  
NDEx NetworkGCSAML
Atlas of Cancer Signalling NetworkGCSAML
Wikipedia pathwaysGCSAML
Orthology - Evolution
OrthoDB148823
GeneTree (enSembl)ENSG00000169224
Phylogenetic Trees/Animal Genes : TreeFamGCSAML
HOVERGENQ5JQS6
HOGENOMQ5JQS6
Homologs : HomoloGeneGCSAML
Homology/Alignments : Family Browser (UCSC)GCSAML
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCSAML [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCSAML
dbVarGCSAML
ClinVarGCSAML
1000_GenomesGCSAML 
Exome Variant ServerGCSAML
ExAC (Exome Aggregation Consortium)GCSAML (select the gene name)
Genetic variants : HAPMAP148823
Genomic Variants (DGV)GCSAML [DGVbeta]
DECIPHERGCSAML [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCSAML 
Mutations
ICGC Data PortalGCSAML 
TCGA Data PortalGCSAML 
Broad Tumor PortalGCSAML
OASIS PortalGCSAML [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGCSAML
BioMutasearch GCSAML
DgiDB (Drug Gene Interaction Database)GCSAML
DoCM (Curated mutations)GCSAML (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCSAML (select a term)
intoGenGCSAML
Cancer3DGCSAML(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGCSAML
Genetic Testing Registry GCSAML
NextProtQ5JQS6 [Medical]
TSGene148823
GENETestsGCSAML
Huge Navigator GCSAML [HugePedia]
snp3D : Map Gene to Disease148823
BioCentury BCIQGCSAML
ClinGenGCSAML
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148823
Chemical/Pharm GKB GenePA142672467
Clinical trialGCSAML
Miscellaneous
canSAR (ICR)GCSAML (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCSAML
EVEXGCSAML
GoPubMedGCSAML
iHOPGCSAML
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:13:30 CEST 2017

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