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GDA (guanine deaminase)

Identity

Other namesCYPIN
GUANASE
NEDASIN
HGNC (Hugo) GDA
LocusID (NCBI) 9615
Location 9q21.13
Location_base_pair Starts at 74764267 and ends at 74867140 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GDA   4212
Cards
Entrez_Gene (NCBI)GDA  9615  guanine deaminase
GeneCards (Weizmann)GDA
Ensembl (Hinxton)ENSG00000119125 [Gene_View]  chr9:74764267-74867140 [Contig_View]  GDA [Vega]
AceView (NCBI)GDA
Genatlas (Paris)GDA
WikiGenes9615
SOURCE (Princeton)NM_001242505 NM_001242506 NM_001242507 NM_004293
Genomic and cartography
GoldenPath (UCSC)GDA  -  9q21.13   chr9:74764267-74867140 +  9q21.13   [Description]    (hg19-Feb_2009)
EnsemblGDA - 9q21.13 [CytoView]
Mapping of homologs : NCBIGDA [Mapview]
OMIM139260   
Gene and transcription
Genbank (Entrez)AA985376 AB033084 AF019638 AF095286 AJ420441
RefSeq transcript (Entrez)NM_001242505 NM_001242506 NM_001242507 NM_004293
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_030562 NT_008470 NW_001839221 NW_004929366
Consensus coding sequences : CCDS (NCBI)GDA
Cluster EST : UnigeneHs.494163 [ NCBI ]
CGAP (NCI)Hs.494163
Alternative Splicing : Fast-db (Paris)GSHG0030187
Alternative Splicing GalleryENSG00000119125
Gene ExpressionGDA [ NCBI-GEO ]     GDA [ SEEK ]   GDA [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2T3 (Uniprot)
NextProtQ9Y2T3  [Medical]
With graphics : InterProQ9Y2T3
Splice isoforms : SwissVarQ9Y2T3 (Swissvar)
Catalytic activity : Enzyme3.5.4.3 [ Enzyme-Expasy ]   3.5.4.33.5.4.3 [ IntEnz-EBI ]   3.5.4.3 [ BRENDA ]   3.5.4.3 [ KEGG ]   
Domains : Interpro (EBI)Amidohydro_1    Guanine_deaminase   
Related proteins : CluSTrQ9Y2T3
Domain families : Pfam (Sanger)Amidohydro_1 (PF01979)   
Domain families : Pfam (NCBI)pfam01979   
DMDM Disease mutations9615
Blocks (Seattle)Q9Y2T3
PDB (SRS)2UZ9    3E0L    4AQL   
PDB (PDBSum)2UZ9    3E0L    4AQL   
PDB (IMB)2UZ9    3E0L    4AQL   
PDB (RSDB)2UZ9    3E0L    4AQL   
Human Protein AtlasENSG00000119125
Peptide AtlasQ9Y2T3
HPRD08849
IPIIPI00942902   IPI00985176   IPI00644409   IPI00873506   IPI00514220   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2T3
IntAct (EBI)Q9Y2T3
FunCoupENSG00000119125
BioGRIDGDA
InParanoidQ9Y2T3
Interologous Interaction database Q9Y2T3
IntegromeDBGDA
STRING (EMBL)GDA
Ontologies - Pathways
Ontology : AmiGOintracellular  cytosol  nucleobase-containing compound metabolic process  purine nucleobase metabolic process  guanine catabolic process  purine nucleotide catabolic process  nervous system development  zinc ion binding  guanine deaminase activity  small molecule metabolic process  nucleobase-containing small molecule metabolic process  
Ontology : EGO-EBIintracellular  cytosol  nucleobase-containing compound metabolic process  purine nucleobase metabolic process  guanine catabolic process  purine nucleotide catabolic process  nervous system development  zinc ion binding  guanine deaminase activity  small molecule metabolic process  nucleobase-containing small molecule metabolic process  
Pathways : KEGGPurine metabolism   
REACTOMEGDA
Protein Interaction DatabaseGDA
Wikipedia pathwaysGDA
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GDA
SNP (GeneSNP Utah)GDA
SNP : HGBaseGDA
Genetic variants : HAPMAPGDA
1000_GenomesGDA 
ICGC programENSG00000119125 
Somatic Mutations in Cancer : COSMICGDA 
CONAN: Copy Number AnalysisGDA 
Mutations and Diseases : HGMDGDA
OMIM139260   
GENETestsGDA
Disease Genetic AssociationGDA
Huge Navigator GDA [HugePedia]  GDA [HugeCancerGEM]
Genomic VariantsGDA  GDA [DGVbeta]
Exome VariantGDA
dbVarGDA
ClinVarGDA
snp3D : Map Gene to Disease9615
General knowledge
Homologs : HomoloGeneGDA
Homology/Alignments : Family Browser (UCSC)GDA
Phylogenetic Trees/Animal Genes : TreeFamGDA
Chemical/Protein Interactions : CTD9615
Chemical/Pharm GKB GenePA28625
Clinical trialGDA
Cancer Resource (Charite)ENSG00000119125
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineGDA
iHOPGDA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:40:47 CEST 2014

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