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GDAP1 (ganglioside induced differentiation associated protein 1)

Identity

Other namesCMT4
CMT4A
CMTRIA
HGNC (Hugo) GDAP1
LocusID (NCBI) 54332
Atlas_Id 52818
Location 8q21.11
Location_base_pair Starts at 75262618 and ends at 75279335 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDAP1   15968
Cards
Entrez_Gene (NCBI)GDAP1  54332  ganglioside induced differentiation associated protein 1
GeneCards (Weizmann)GDAP1
Ensembl hg19 (Hinxton)ENSG00000104381 [Gene_View]  chr8:75262618-75279335 [Contig_View]  GDAP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104381 [Gene_View]  chr8:75262618-75279335 [Contig_View]  GDAP1 [Vega]
ICGC DataPortalENSG00000104381
TCGA cBioPortalGDAP1
AceView (NCBI)GDAP1
Genatlas (Paris)GDAP1
WikiGenes54332
SOURCE (Princeton)GDAP1
Genomic and cartography
GoldenPath hg19 (UCSC)GDAP1  -     chr8:75262618-75279335 +  8q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GDAP1  -     8q21.11   [Description]    (hg38-Dec_2013)
EnsemblGDAP1 - 8q21.11 [CytoView hg19]  GDAP1 - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBIGDAP1 [Mapview hg19]  GDAP1 [Mapview hg38]
OMIM214400   606598   607706   607831   608340   
Gene and transcription
Genbank (Entrez)AB551556 AB551557 AB551558 AK292572 AK295594
RefSeq transcript (Entrez)NM_001040875 NM_018972
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_008787 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)GDAP1
Cluster EST : UnigeneHs.168950 [ NCBI ]
CGAP (NCI)Hs.168950
Alternative Splicing GalleryENSG00000104381
Gene ExpressionGDAP1 [ NCBI-GEO ]   GDAP1 [ EBI - ARRAY_EXPRESS ]   GDAP1 [ SEEK ]   GDAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54332
GTEX Portal (Tissue expression)GDAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB36 (Uniprot)
NextProtQ8TB36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB36
Splice isoforms : SwissVarQ8TB36 (Swissvar)
PhosPhoSitePlusQ8TB36
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione_S-Trfase_N    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)GST_N_3 (PF13417)   
Domain families : Pfam (NCBI)pfam13417   
DMDM Disease mutations54332
Blocks (Seattle)GDAP1
SuperfamilyQ8TB36
Human Protein AtlasENSG00000104381
Peptide AtlasQ8TB36
HPRD05963
IPIIPI00877014   IPI00290544   IPI00980842   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB36
IntAct (EBI)Q8TB36
FunCoupENSG00000104381
BioGRIDGDAP1
STRING (EMBL)GDAP1
ZODIACGDAP1
Ontologies - Pathways
QuickGOQ8TB36
Ontology : AmiGOmitochondrial fission  glutathione transferase activity  nucleus  cytoplasm  mitochondrion  protein targeting to mitochondrion  glutathione metabolic process  mitochondrial fusion  membrane  integral component of mitochondrial outer membrane  response to retinoic acid  
Ontology : EGO-EBImitochondrial fission  glutathione transferase activity  nucleus  cytoplasm  mitochondrion  protein targeting to mitochondrion  glutathione metabolic process  mitochondrial fusion  membrane  integral component of mitochondrial outer membrane  response to retinoic acid  
NDEx Network
Atlas of Cancer Signalling NetworkGDAP1
Wikipedia pathwaysGDAP1
Orthology - Evolution
OrthoDB54332
GeneTree (enSembl)ENSG00000104381
Phylogenetic Trees/Animal Genes : TreeFamGDAP1
Homologs : HomoloGeneGDAP1
Homology/Alignments : Family Browser (UCSC)GDAP1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGDAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDAP1
dbVarGDAP1
ClinVarGDAP1
1000_GenomesGDAP1 
Exome Variant ServerGDAP1
ExAC (Exome Aggregation Consortium)GDAP1 (select the gene name)
Genetic variants : HAPMAP54332
Genomic Variants (DGV)GDAP1 [DGVbeta]
Mutations
ICGC Data PortalGDAP1 
TCGA Data PortalGDAP1 
Broad Tumor PortalGDAP1
OASIS PortalGDAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDAP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)MITOchondrial DYNamics variation pages
BioMutasearch GDAP1
DgiDB (Drug Gene Interaction Database)GDAP1
DoCM (Curated mutations)GDAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDAP1 (select a term)
intoGenGDAP1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:75262618-75279335  ENSG00000104381
CONAN: Copy Number AnalysisGDAP1 
Mutations and Diseases : HGMDGDAP1
OMIM214400    606598    607706    607831    608340   
MedgenGDAP1
Genetic Testing Registry GDAP1
NextProtQ8TB36 [Medical]
TSGene54332
GENETestsGDAP1
Huge Navigator GDAP1 [HugePedia]
snp3D : Map Gene to Disease54332
BioCentury BCIQGDAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54332
Chemical/Pharm GKB GenePA28626
Clinical trialGDAP1
Miscellaneous
canSAR (ICR)GDAP1 (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDAP1
EVEXGDAP1
GoPubMedGDAP1
iHOPGDAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 18:47:25 CEST 2016

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