Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GDAP1 (ganglioside induced differentiation associated protein 1)

Identity

Other namesCMT4
CMT4A
CMTRIA
HGNC (Hugo) GDAP1
LocusID (NCBI) 54332
Location 8q21.11
Location_base_pair Starts at 75262618 and ends at 75279335 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)GDAP1   15968
Cards
Entrez_Gene (NCBI)GDAP1  54332  ganglioside induced differentiation associated protein 1
GeneCards (Weizmann)GDAP1
Ensembl (Hinxton)ENSG00000104381 [Gene_View]  chr8:75262618-75279335 [Contig_View]  GDAP1 [Vega]
AceView (NCBI)GDAP1
Genatlas (Paris)GDAP1
WikiGenes54332
SOURCE (Princeton)NM_001040875 NM_018972
Genomic and cartography
GoldenPath (UCSC)GDAP1  -  8q21.11   chr8:75262618-75279335 +  8q21.11   [Description]    (hg19-Feb_2009)
EnsemblGDAP1 - 8q21.11 [CytoView]
Mapping of homologs : NCBIGDAP1 [Mapview]
OMIM214400   606598   607706   607831   608340   
Gene and transcription
Genbank (Entrez)AB551556 AB551557 AB551558 AK292572 AK295594
RefSeq transcript (Entrez)NM_001040875 NM_018972
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_008787 NT_008183 NW_001839132 NW_004929339
Consensus coding sequences : CCDS (NCBI)GDAP1
Cluster EST : UnigeneHs.168950 [ NCBI ]
CGAP (NCI)Hs.168950
Alternative Splicing : Fast-db (Paris)GSHG0029091
Alternative Splicing GalleryENSG00000104381
Gene ExpressionGDAP1 [ NCBI-GEO ]     GDAP1 [ SEEK ]   GDAP1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB36 (Uniprot)
NextProtQ8TB36  [Medical]
With graphics : InterProQ8TB36
Splice isoforms : SwissVarQ8TB36 (Swissvar)
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione_S-Trfase_N    Thioredoxin-like_fold   
Related proteins : CluSTrQ8TB36
Domain families : Pfam (Sanger)GST_N_3 (PF13417)   
Domain families : Pfam (NCBI)pfam13417   
DMDM Disease mutations54332
Blocks (Seattle)Q8TB36
Human Protein AtlasENSG00000104381
Peptide AtlasQ8TB36
HPRD05963
IPIIPI00877014   IPI00290544   IPI00980842   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB36
IntAct (EBI)Q8TB36
FunCoupENSG00000104381
BioGRIDGDAP1
InParanoidQ8TB36
Interologous Interaction database Q8TB36
IntegromeDBGDAP1
STRING (EMBL)GDAP1
Ontologies - Pathways
Ontology : AmiGOmitochondrial fission  protein targeting to mitochondrion  integral to mitochondrial outer membrane  response to retinoic acid  
Ontology : EGO-EBImitochondrial fission  protein targeting to mitochondrion  integral to mitochondrial outer membrane  response to retinoic acid  
REACTOMEGDAP1
Protein Interaction DatabaseGDAP1
Wikipedia pathwaysGDAP1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GDAP1
SNP (GeneSNP Utah)GDAP1
SNP : HGBaseGDAP1
Genetic variants : HAPMAPGDAP1
1000_GenomesGDAP1 
ICGC programENSG00000104381 
Somatic Mutations in Cancer : COSMICGDAP1 
CONAN: Copy Number AnalysisGDAP1 
Mutations and Diseases : HGMDGDAP1
OMIM214400    606598    607706    607831    608340   
GENETestsGDAP1
Disease Genetic AssociationGDAP1
Huge Navigator GDAP1 [HugePedia]  GDAP1 [HugeCancerGEM]
Genomic VariantsGDAP1  GDAP1 [DGVbeta]
Exome VariantGDAP1
dbVarGDAP1
ClinVarGDAP1
snp3D : Map Gene to Disease54332
General knowledge
Homologs : HomoloGeneGDAP1
Homology/Alignments : Family Browser (UCSC)GDAP1
Phylogenetic Trees/Animal Genes : TreeFamGDAP1
Chemical/Protein Interactions : CTD54332
Chemical/Pharm GKB GenePA28626
Clinical trialGDAP1
Cancer Resource (Charite)ENSG00000104381
Other databases
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
CoreMineGDAP1
iHOPGDAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:45:16 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.