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GDAP1L1 (ganglioside induced differentiation associated protein 1-like 1)

Identity

Alias_namesganglioside induced differentiation associated protein 1-like 1
Other aliasdJ881L22.1
dJ995J12.1.1
HGNC (Hugo) GDAP1L1
LocusID (NCBI) 78997
Atlas_Id 63743
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 42875898 and ends at 42909557 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VPS26A (10q22.1) / GDAP1L1 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDAP1L1   4213
Cards
Entrez_Gene (NCBI)GDAP1L1  78997  ganglioside induced differentiation associated protein 1-like 1
AliasesdJ881L22.1; dJ995J12.1.1
GeneCards (Weizmann)GDAP1L1
Ensembl hg19 (Hinxton)ENSG00000124194 [Gene_View]  chr20:42875898-42909557 [Contig_View]  GDAP1L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124194 [Gene_View]  chr20:42875898-42909557 [Contig_View]  GDAP1L1 [Vega]
ICGC DataPortalENSG00000124194
TCGA cBioPortalGDAP1L1
AceView (NCBI)GDAP1L1
Genatlas (Paris)GDAP1L1
WikiGenes78997
SOURCE (Princeton)GDAP1L1
Genetics Home Reference (NIH)GDAP1L1
Genomic and cartography
GoldenPath hg19 (UCSC)GDAP1L1  -     chr20:42875898-42909557 +  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GDAP1L1  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblGDAP1L1 - 20q13.12 [CytoView hg19]  GDAP1L1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIGDAP1L1 [Mapview hg19]  GDAP1L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF123764 AF123765 AF277566 AI564068 AK056251
RefSeq transcript (Entrez)NM_001256737 NM_001256738 NM_001256739 NM_001256740 NM_024034
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)GDAP1L1
Cluster EST : UnigeneHs.517059 [ NCBI ]
CGAP (NCI)Hs.517059
Alternative Splicing GalleryENSG00000124194
Gene ExpressionGDAP1L1 [ NCBI-GEO ]   GDAP1L1 [ EBI - ARRAY_EXPRESS ]   GDAP1L1 [ SEEK ]   GDAP1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDAP1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78997
GTEX Portal (Tissue expression)GDAP1L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MZ0
Splice isoforms : SwissVarQ96MZ0
PhosPhoSitePlusQ96MZ0
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione_S-Trfase_N    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)GST_N_3 (PF13417)   
Domain families : Pfam (NCBI)pfam13417   
Conserved Domain (NCBI)GDAP1L1
DMDM Disease mutations78997
Blocks (Seattle)GDAP1L1
SuperfamilyQ96MZ0
Human Protein AtlasENSG00000124194
Peptide AtlasQ96MZ0
HPRD17033
IPIIPI00028723   IPI00513926   IPI01014016   IPI00306658   IPI00383140   IPI00844379   IPI01012794   IPI00552256   
Protein Interaction databases
DIP (DOE-UCLA)Q96MZ0
IntAct (EBI)Q96MZ0
FunCoupENSG00000124194
BioGRIDGDAP1L1
STRING (EMBL)GDAP1L1
ZODIACGDAP1L1
Ontologies - Pathways
QuickGOQ96MZ0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGDAP1L1
Atlas of Cancer Signalling NetworkGDAP1L1
Wikipedia pathwaysGDAP1L1
Orthology - Evolution
OrthoDB78997
GeneTree (enSembl)ENSG00000124194
Phylogenetic Trees/Animal Genes : TreeFamGDAP1L1
HOVERGENQ96MZ0
HOGENOMQ96MZ0
Homologs : HomoloGeneGDAP1L1
Homology/Alignments : Family Browser (UCSC)GDAP1L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDAP1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDAP1L1
dbVarGDAP1L1
ClinVarGDAP1L1
1000_GenomesGDAP1L1 
Exome Variant ServerGDAP1L1
ExAC (Exome Aggregation Consortium)GDAP1L1 (select the gene name)
Genetic variants : HAPMAP78997
Genomic Variants (DGV)GDAP1L1 [DGVbeta]
DECIPHER (Syndromes)20:42875898-42909557  ENSG00000124194
CONAN: Copy Number AnalysisGDAP1L1 
Mutations
ICGC Data PortalGDAP1L1 
TCGA Data PortalGDAP1L1 
Broad Tumor PortalGDAP1L1
OASIS PortalGDAP1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDAP1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGDAP1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GDAP1L1
DgiDB (Drug Gene Interaction Database)GDAP1L1
DoCM (Curated mutations)GDAP1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDAP1L1 (select a term)
intoGenGDAP1L1
Cancer3DGDAP1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGDAP1L1
Genetic Testing Registry GDAP1L1
NextProtQ96MZ0 [Medical]
TSGene78997
GENETestsGDAP1L1
Huge Navigator GDAP1L1 [HugePedia]
snp3D : Map Gene to Disease78997
BioCentury BCIQGDAP1L1
ClinGenGDAP1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78997
Chemical/Pharm GKB GenePA28627
Clinical trialGDAP1L1
Miscellaneous
canSAR (ICR)GDAP1L1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDAP1L1
EVEXGDAP1L1
GoPubMedGDAP1L1
iHOPGDAP1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:57 CET 2017

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