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GDAP1L1 (ganglioside induced differentiation associated protein 1 like 1)

Identity

Alias (NCBI)dJ881L22.1
dJ995J12.1.1
HGNC (Hugo) GDAP1L1
HGNC Previous nameganglioside induced differentiation associated protein 1-like 1
LocusID (NCBI) 78997
Atlas_Id 57439
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44247308 and ends at 44280931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VPS26A (10q22.1) / GDAP1L1 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GDAP1L1   4213
Cards
Entrez_Gene (NCBI)GDAP1L1    ganglioside induced differentiation associated protein 1 like 1
AliasesdJ881L22.1; dJ995J12.1.1
GeneCards (Weizmann)GDAP1L1
Ensembl hg19 (Hinxton)ENSG00000124194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124194 [Gene_View]  ENSG00000124194 [Sequence]  chr20:44247308-44280931 [Contig_View]  GDAP1L1 [Vega]
ICGC DataPortalENSG00000124194
TCGA cBioPortalGDAP1L1
AceView (NCBI)GDAP1L1
Genatlas (Paris)GDAP1L1
SOURCE (Princeton)GDAP1L1
Genetics Home Reference (NIH)GDAP1L1
Genomic and cartography
GoldenPath hg38 (UCSC)GDAP1L1  -     chr20:44247308-44280931 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDAP1L1  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathGDAP1L1 - 20q13.12 [CytoView hg19]  GDAP1L1 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000124194
Genome Data Viewer NCBIGDAP1L1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF123764 AF123765 AF277566 AI564068 AK056251
RefSeq transcript (Entrez)NM_001256737 NM_001256738 NM_001256739 NM_001256740 NM_024034
Consensus coding sequences : CCDS (NCBI)GDAP1L1
Gene ExpressionGDAP1L1 [ NCBI-GEO ]   GDAP1L1 [ EBI - ARRAY_EXPRESS ]   GDAP1L1 [ SEEK ]   GDAP1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDAP1L1 [ Firebrowse - Broad ]
GenevisibleExpression of GDAP1L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78997
GTEX Portal (Tissue expression)GDAP1L1
Human Protein AtlasENSG00000124194-GDAP1L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MZ0
PhosPhoSitePlusQ96MZ0
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)GDAP1    Glutathione-S-Trfase_C-like    Glutathione-S-Trfase_C_sf    Glutathione_S-Trfase_N    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)GST_N_3 (PF13417)   
Domain families : Pfam (NCBI)pfam13417   
Conserved Domain (NCBI)GDAP1L1
SuperfamilyQ96MZ0
AlphaFold pdb e-kbQ96MZ0   
Human Protein Atlas [tissue]ENSG00000124194-GDAP1L1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96MZ0
IntAct (EBI)Q96MZ0
BioGRIDGDAP1L1
STRING (EMBL)GDAP1L1
ZODIACGDAP1L1
Ontologies - Pathways
QuickGOQ96MZ0
Ontology : AmiGOglutathione metabolic process  
Ontology : EGO-EBIglutathione metabolic process  
NDEx NetworkGDAP1L1
Atlas of Cancer Signalling NetworkGDAP1L1
Wikipedia pathwaysGDAP1L1
Orthology - Evolution
OrthoDB78997
GeneTree (enSembl)ENSG00000124194
Phylogenetic Trees/Animal Genes : TreeFamGDAP1L1
Homologs : HomoloGeneGDAP1L1
Homology/Alignments : Family Browser (UCSC)GDAP1L1
Gene fusions - Rearrangements
Fusion : QuiverGDAP1L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDAP1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDAP1L1
dbVarGDAP1L1
ClinVarGDAP1L1
MonarchGDAP1L1
1000_GenomesGDAP1L1 
Exome Variant ServerGDAP1L1
GNOMAD BrowserENSG00000124194
Varsome BrowserGDAP1L1
ACMGGDAP1L1 variants
VarityQ96MZ0
Genomic Variants (DGV)GDAP1L1 [DGVbeta]
DECIPHERGDAP1L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDAP1L1 
Mutations
ICGC Data PortalGDAP1L1 
TCGA Data PortalGDAP1L1 
Broad Tumor PortalGDAP1L1
OASIS PortalGDAP1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDAP1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGDAP1L1
Mutations and Diseases : HGMDGDAP1L1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGDAP1L1
DgiDB (Drug Gene Interaction Database)GDAP1L1
DoCM (Curated mutations)GDAP1L1
CIViC (Clinical Interpretations of Variants in Cancer)GDAP1L1
Cancer3DGDAP1L1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGDAP1L1
MedgenGDAP1L1
Genetic Testing Registry GDAP1L1
NextProtQ96MZ0 [Medical]
GENETestsGDAP1L1
Target ValidationGDAP1L1
Huge Navigator GDAP1L1 [HugePedia]
ClinGenGDAP1L1
Clinical trials, drugs, therapy
MyCancerGenomeGDAP1L1
Protein Interactions : CTDGDAP1L1
Pharm GKB GenePA28627
PharosQ96MZ0
Clinical trialGDAP1L1
Miscellaneous
canSAR (ICR)GDAP1L1
HarmonizomeGDAP1L1
DataMed IndexGDAP1L1
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGDAP1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:10:33 CEST 2021

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