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GDE1 (glycerophosphodiester phosphodiesterase 1)

Identity

Alias_symbol (synonym)MIR16
Other alias363E6.2
HGNC (Hugo) GDE1
LocusID (NCBI) 51573
Atlas_Id 51727
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19501693 and ends at 19522145 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNKSR3 (6q25.2) / GDE1 (16p12.3)GDE1 (16p12.3) / COL9A3 (20q13.33)GDE1 (16p12.3) / GDE1 (16p12.3)
GDE1 (16p12.3) / RANGAP1 (22q13.2)LIN54 (4q21.22) / GDE1 (16p12.3)TMEM184C (4q31.23) / GDE1 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDE1   29644
Cards
Entrez_Gene (NCBI)GDE1  51573  glycerophosphodiester phosphodiesterase 1
Aliases363E6.2; MIR16
GeneCards (Weizmann)GDE1
Ensembl hg19 (Hinxton)ENSG00000006007 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006007 [Gene_View]  chr16:19501693-19522145 [Contig_View]  GDE1 [Vega]
ICGC DataPortalENSG00000006007
TCGA cBioPortalGDE1
AceView (NCBI)GDE1
Genatlas (Paris)GDE1
WikiGenes51573
SOURCE (Princeton)GDE1
Genetics Home Reference (NIH)GDE1
Genomic and cartography
GoldenPath hg38 (UCSC)GDE1  -     chr16:19501693-19522145 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDE1  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblGDE1 - 16p12.3 [CytoView hg19]  GDE1 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIGDE1 [Mapview hg19]  GDE1 [Mapview hg38]
OMIM605943   
Gene and transcription
Genbank (Entrez)AF212862 AF306697 AF306698 AK312912 AY463154
RefSeq transcript (Entrez)NM_001324066 NM_001324067 NM_016641
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GDE1
Cluster EST : UnigeneHs.512607 [ NCBI ]
CGAP (NCI)Hs.512607
Alternative Splicing GalleryENSG00000006007
Gene ExpressionGDE1 [ NCBI-GEO ]   GDE1 [ EBI - ARRAY_EXPRESS ]   GDE1 [ SEEK ]   GDE1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51573
GTEX Portal (Tissue expression)GDE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZC3
Splice isoforms : SwissVarQ9NZC3
Catalytic activity : Enzyme3.1.4.44 [ Enzyme-Expasy ]   3.1.4.443.1.4.44 [ IntEnz-EBI ]   3.1.4.44 [ BRENDA ]   3.1.4.44 [ KEGG ]   
PhosPhoSitePlusQ9NZC3
Domaine pattern : Prosite (Expaxy)GP_PDE (PS51704)   
Domains : Interpro (EBI)GlyceroP-diester-Pdiesterase    GP_PDE_dom    PLC-like_Pdiesterase_TIM-brl   
Domain families : Pfam (Sanger)GDPD (PF03009)   
Domain families : Pfam (NCBI)pfam03009   
Conserved Domain (NCBI)GDE1
DMDM Disease mutations51573
Blocks (Seattle)GDE1
SuperfamilyQ9NZC3
Human Protein AtlasENSG00000006007
Peptide AtlasQ9NZC3
HPRD12070
IPIIPI00010279   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZC3
IntAct (EBI)Q9NZC3
FunCoupENSG00000006007
BioGRIDGDE1
STRING (EMBL)GDE1
ZODIACGDE1
Ontologies - Pathways
QuickGOQ9NZC3
Ontology : AmiGOplasma membrane  lipid metabolic process  glycerophosphodiester phosphodiesterase activity  integral component of membrane  cytoplasmic vesicle membrane  glycerophospholipid catabolic process  metal ion binding  glycerophosphoinositol glycerophosphodiesterase activity  
Ontology : EGO-EBIplasma membrane  lipid metabolic process  glycerophosphodiester phosphodiesterase activity  integral component of membrane  cytoplasmic vesicle membrane  glycerophospholipid catabolic process  metal ion binding  glycerophosphoinositol glycerophosphodiesterase activity  
NDEx NetworkGDE1
Atlas of Cancer Signalling NetworkGDE1
Wikipedia pathwaysGDE1
Orthology - Evolution
OrthoDB51573
GeneTree (enSembl)ENSG00000006007
Phylogenetic Trees/Animal Genes : TreeFamGDE1
HOVERGENQ9NZC3
HOGENOMQ9NZC3
Homologs : HomoloGeneGDE1
Homology/Alignments : Family Browser (UCSC)GDE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDE1
dbVarGDE1
ClinVarGDE1
1000_GenomesGDE1 
Exome Variant ServerGDE1
ExAC (Exome Aggregation Consortium)GDE1 (select the gene name)
Genetic variants : HAPMAP51573
Genomic Variants (DGV)GDE1 [DGVbeta]
DECIPHERGDE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDE1 
Mutations
ICGC Data PortalGDE1 
TCGA Data PortalGDE1 
Broad Tumor PortalGDE1
OASIS PortalGDE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGDE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GDE1
DgiDB (Drug Gene Interaction Database)GDE1
DoCM (Curated mutations)GDE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDE1 (select a term)
intoGenGDE1
Cancer3DGDE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605943   
Orphanet
MedgenGDE1
Genetic Testing Registry GDE1
NextProtQ9NZC3 [Medical]
TSGene51573
GENETestsGDE1
Target ValidationGDE1
Huge Navigator GDE1 [HugePedia]
snp3D : Map Gene to Disease51573
BioCentury BCIQGDE1
ClinGenGDE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51573
Chemical/Pharm GKB GenePA162389327
Clinical trialGDE1
Miscellaneous
canSAR (ICR)GDE1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDE1
EVEXGDE1
GoPubMedGDE1
iHOPGDE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:02 CEST 2017

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