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GDE1 (glycerophosphodiester phosphodiesterase 1)

Identity

Alias (NCBI)363E6.2
MIR16
HGNC (Hugo) GDE1
HGNC Alias symbMIR16
HGNC Alias namemembrane interacting protein of RGS16
LocusID (NCBI) 51573
Atlas_Id 51727
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19501693 and ends at 19522098 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNKSR3 (6q25.2) / GDE1 (16p12.3)GDE1 (16p12.3) / COL9A3 (20q13.33)GDE1 (16p12.3) / GDE1 (16p12.3)
GDE1 (16p12.3) / RANGAP1 (22q13.2)LIN54 (4q21.22) / GDE1 (16p12.3)TMEM184C (4q31.23) / GDE1 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GDE1   29644
Cards
Entrez_Gene (NCBI)GDE1    glycerophosphodiester phosphodiesterase 1
Aliases363E6.2; MIR16
GeneCards (Weizmann)GDE1
Ensembl hg19 (Hinxton)ENSG00000006007 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006007 [Gene_View]  ENSG00000006007 [Sequence]  chr16:19501693-19522098 [Contig_View]  GDE1 [Vega]
ICGC DataPortalENSG00000006007
TCGA cBioPortalGDE1
AceView (NCBI)GDE1
Genatlas (Paris)GDE1
SOURCE (Princeton)GDE1
Genetics Home Reference (NIH)GDE1
Genomic and cartography
GoldenPath hg38 (UCSC)GDE1  -     chr16:19501693-19522098 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDE1  -     16p12.3   [Description]    (hg19-Feb_2009)
GoldenPathGDE1 - 16p12.3 [CytoView hg19]  GDE1 - 16p12.3 [CytoView hg38]
ImmunoBaseENSG00000006007
Genome Data Viewer NCBIGDE1 [Mapview hg19]  
OMIM605943   
Gene and transcription
Genbank (Entrez)AF212862 AF306697 AF306698 AK312912 AY463154
RefSeq transcript (Entrez)NM_001324066 NM_001324067 NM_016641
Consensus coding sequences : CCDS (NCBI)GDE1
Gene ExpressionGDE1 [ NCBI-GEO ]   GDE1 [ EBI - ARRAY_EXPRESS ]   GDE1 [ SEEK ]   GDE1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDE1 [ Firebrowse - Broad ]
GenevisibleExpression of GDE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51573
GTEX Portal (Tissue expression)GDE1
Human Protein AtlasENSG00000006007-GDE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZC3
PhosPhoSitePlusQ9NZC3
Domaine pattern : Prosite (Expaxy)GP_PDE (PS51704)   
Domains : Interpro (EBI)GP_PDE_dom    PLC-like_Pdiesterase_TIM-brl   
Domain families : Pfam (Sanger)GDPD (PF03009)   
Domain families : Pfam (NCBI)pfam03009   
Conserved Domain (NCBI)GDE1
SuperfamilyQ9NZC3
AlphaFold pdb e-kbQ9NZC3   
Human Protein Atlas [tissue]ENSG00000006007-GDE1 [tissue]
HPRD12070
Protein Interaction databases
DIP (DOE-UCLA)Q9NZC3
IntAct (EBI)Q9NZC3
BioGRIDGDE1
STRING (EMBL)GDE1
ZODIACGDE1
Ontologies - Pathways
QuickGOQ9NZC3
Ontology : AmiGOlysophospholipase activity  protein binding  plasma membrane  plasma membrane  ethanolamine metabolic process  lipid metabolic process  phospholipid metabolic process  glycerophosphodiester phosphodiesterase activity  glycerophosphodiester phosphodiesterase activity  integral component of membrane  cytoplasmic vesicle membrane  glycerophospholipid catabolic process  metal ion binding  glycerophosphoinositol glycerophosphodiesterase activity  N-acylethanolamine metabolic process  
Ontology : EGO-EBIlysophospholipase activity  protein binding  plasma membrane  plasma membrane  ethanolamine metabolic process  lipid metabolic process  phospholipid metabolic process  glycerophosphodiester phosphodiesterase activity  glycerophosphodiester phosphodiesterase activity  integral component of membrane  cytoplasmic vesicle membrane  glycerophospholipid catabolic process  metal ion binding  glycerophosphoinositol glycerophosphodiesterase activity  N-acylethanolamine metabolic process  
NDEx NetworkGDE1
Atlas of Cancer Signalling NetworkGDE1
Wikipedia pathwaysGDE1
Orthology - Evolution
OrthoDB51573
GeneTree (enSembl)ENSG00000006007
Phylogenetic Trees/Animal Genes : TreeFamGDE1
Homologs : HomoloGeneGDE1
Homology/Alignments : Family Browser (UCSC)GDE1
Gene fusions - Rearrangements
Fusion : QuiverGDE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDE1
dbVarGDE1
ClinVarGDE1
MonarchGDE1
1000_GenomesGDE1 
Exome Variant ServerGDE1
GNOMAD BrowserENSG00000006007
Varsome BrowserGDE1
ACMGGDE1 variants
VarityQ9NZC3
Genomic Variants (DGV)GDE1 [DGVbeta]
DECIPHERGDE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDE1 
Mutations
ICGC Data PortalGDE1 
TCGA Data PortalGDE1 
Broad Tumor PortalGDE1
OASIS PortalGDE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGDE1
Mutations and Diseases : HGMDGDE1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGDE1
DgiDB (Drug Gene Interaction Database)GDE1
DoCM (Curated mutations)GDE1
CIViC (Clinical Interpretations of Variants in Cancer)GDE1
Cancer3DGDE1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605943   
Orphanet
DisGeNETGDE1
MedgenGDE1
Genetic Testing Registry GDE1
NextProtQ9NZC3 [Medical]
GENETestsGDE1
Target ValidationGDE1
Huge Navigator GDE1 [HugePedia]
ClinGenGDE1
Clinical trials, drugs, therapy
MyCancerGenomeGDE1
Protein Interactions : CTDGDE1
Pharm GKB GenePA162389327
PharosQ9NZC3
Clinical trialGDE1
Miscellaneous
canSAR (ICR)GDE1
HarmonizomeGDE1
DataMed IndexGDE1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGDE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:10:34 CEST 2021

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