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GDEP (gene differentially expressed in prostate)

Identity

Other namesPCAN1
HGNC (Hugo) -
LocusID (NCBI) 118425
Location 4q21.21
Location_base_pair Starts at 80748625 and ends at 80784401 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)-   -
Entrez_Gene (NCBI)GDEP  118425  gene differentially expressed in prostate
Cards
GeneCards (Weizmann)GDEP
Ensembl (Hinxton) [Gene_View]  chr4:80748625-80784401 [Contig_View]  GDEP [Vega]
AceView (NCBI)GDEP
Genatlas (Paris)GDEP
SOURCE (Stanford)
Genomic and cartography
GoldenPath (UCSC)GDEP  -  4q21.21   chr4:80748625-80784401 +  4q21.21   [Description]    (hg19-Feb_2009)
EnsemblGDEP - 4q21.21 [CytoView]
Mapping of homologs : NCBIGDEP [Mapview]
OMIM609717   
Gene and transcription
Genbank (Entrez)AF388200 AF462307 AK056825 BC125139 DQ893208
RefSeq transcript (SRS)
RefSeq transcript (Entrez)
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838915 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838915 NW_004078021
Consensus coding sequences : CCDS (NCBI)GDEP
Cluster EST : UnigeneHs.104215 [ SRS ] Hs.104215 [ NCBI ]
CGAP (NCI)Hs.104215
Gene ExpressionGDEP [ NCBI-GEO ]   GDEP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J93 (SRS) Q96J93 (Uniprot)
NextProtQ96J93
With graphics : InterProQ96J93
Splice isoforms : SwissVarQ96J93(Swissvar)
Related proteins : CluSTrQ96J93
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM118425
Blocks (Seattle)Q96J93
HPRD17035
IPIIPI00063937   
Protein Interaction databases
DIP (DOE-UCLA)Q96J93
IntAct (EBI)Q96J93
REACTOMEGDEP
Protein Interaction Database118425
BioGRIDGDEP
InParanoidQ96J93
Interologous Interaction database Q96J93
IntegromeDBGDEP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GDEP
SNP (GeneSNP Utah)GDEP
SNP : HGBaseGDEP
Genetic variants : HAPMAPGDEP
Mutations and Diseases : HGMD-
OMIM609717   
GENETests609717   
Disease Genetic Association-
Huge Navigator - [HugePedia]  - [HugeCancerGEM]
Genomic VariantsGDEP  GDEP [DGVbeta]
snp3D : Map Gene to Disease118425
General knowledge
Homologs : HomoloGeneGDEP
Homology/Alignments : Family Browser (UCSC)GDEP
Phylogenetic Trees/Animal Genes : TreeFam-
Chemical/Protein Interactions : CTD118425
Clinical trialGDEP
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneGDEP
iHOPGDEP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:49:55 CEST 2013
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