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GDF1 (growth differentiation factor 1)

Identity

Other namesDORV
DTGA3
RAI
HGNC (Hugo) GDF1
LocusID (NCBI) 2657
Location 19p13.11
Location_base_pair Starts at 18979355 and ends at 19006953 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GDF1   4214
Cards
Entrez_Gene (NCBI)GDF1  2657  growth differentiation factor 1
GeneCards (Weizmann)GDF1
Ensembl (Hinxton)ENSG00000130283 [Gene_View]  chr19:18979355-19006953 [Contig_View]  GDF1 [Vega]
ICGC DataPortalENSG00000130283
AceView (NCBI)GDF1
Genatlas (Paris)GDF1
WikiGenes2657
SOURCE (Princeton)NM_001492
Genomic and cartography
GoldenPath (UCSC)GDF1  -  19p13.11   chr19:18979355-19006953 -  19p13.11   [Description]    (hg19-Feb_2009)
EnsemblGDF1 - 19p13.11 [CytoView]
Mapping of homologs : NCBIGDF1 [Mapview]
OMIM187500   208530   217095   602880   613854   
Gene and transcription
Genbank (Entrez)AB209169 M62302
RefSeq transcript (Entrez)NM_001492
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_012070 NG_033056 NT_011295 NW_001838484 NW_004929414
Consensus coding sequences : CCDS (NCBI)GDF1
Cluster EST : UnigeneHs.412355 [ NCBI ]
CGAP (NCI)Hs.412355
Alternative Splicing : Fast-db (Paris)GSHG0015635
Alternative Splicing GalleryENSG00000130283
Gene ExpressionGDF1 [ NCBI-GEO ]     GDF1 [ SEEK ]   GDF1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP27539 (Uniprot)
NextProtP27539  [Medical]
With graphics : InterProP27539
Splice isoforms : SwissVarP27539 (Swissvar)
Domaine pattern : Prosite (Expaxy)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Inhibin_asu    TGF-b_C    TGF-b_N    TGF-beta-rel    TGFb_CS   
Related proteins : CluSTrP27539
Domain families : Pfam (Sanger)TGF_beta (PF00019)    TGFb_propeptide (PF00688)   
Domain families : Pfam (NCBI)pfam00019    pfam00688   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM Disease mutations2657
Blocks (Seattle)P27539
Human Protein AtlasENSG00000130283
Peptide AtlasP27539
HPRD04194
IPIIPI00019442   IPI00556045   
Protein Interaction databases
DIP (DOE-UCLA)P27539
IntAct (EBI)P27539
FunCoupENSG00000130283
BioGRIDGDF1
InParanoidP27539
Interologous Interaction database P27539
IntegromeDBGDF1
STRING (EMBL)GDF1
Ontologies - Pathways
Ontology : AmiGOcytokine activity  extracellular space  growth factor activity  growth  
Ontology : EGO-EBIcytokine activity  extracellular space  growth factor activity  growth  
Protein Interaction DatabaseGDF1
Wikipedia pathwaysGDF1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GDF1
SNP (GeneSNP Utah)GDF1
SNP : HGBaseGDF1
Genetic variants : HAPMAPGDF1
1000_GenomesGDF1 
ICGC programENSG00000130283 
CONAN: Copy Number AnalysisGDF1 
Somatic Mutations in Cancer : COSMICGDF1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDGDF1
OMIM187500    208530    217095    602880    613854   
MedgenGDF1
GENETestsGDF1
Disease Genetic AssociationGDF1
Huge Navigator GDF1 [HugePedia]  GDF1 [HugeCancerGEM]
Genomic VariantsGDF1  GDF1 [DGVbeta]
Exome VariantGDF1
dbVarGDF1
ClinVarGDF1
snp3D : Map Gene to Disease2657
General knowledge
Homologs : HomoloGeneGDF1
Homology/Alignments : Family Browser (UCSC)GDF1
Phylogenetic Trees/Animal Genes : TreeFamGDF1
Chemical/Protein Interactions : CTD2657
Chemical/Pharm GKB GenePA28629
Clinical trialGDF1
Cancer Resource (Charite)ENSG00000130283
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
CoreMineGDF1
iHOPGDF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:48:03 CEST 2014

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