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GDF1 (growth differentiation factor 1)

Identity

Other namesDORV
DTGA3
RAI
HGNC (Hugo) GDF1
LocusID (NCBI) 2657
Atlas_Id 47033
Location 19p13.11
Location_base_pair Starts at 18979355 and ends at 19006953 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDF1   4214
Cards
Entrez_Gene (NCBI)GDF1  2657  growth differentiation factor 1
AliasesDORV; DTGA3; RAI
GeneCards (Weizmann)GDF1
Ensembl hg19 (Hinxton)ENSG00000130283 [Gene_View]  chr19:18979355-19006953 [Contig_View]  GDF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130283 [Gene_View]  chr19:18979355-19006953 [Contig_View]  GDF1 [Vega]
ICGC DataPortalENSG00000130283
TCGA cBioPortalGDF1
AceView (NCBI)GDF1
Genatlas (Paris)GDF1
WikiGenes2657
SOURCE (Princeton)GDF1
Genomic and cartography
GoldenPath hg19 (UCSC)GDF1  -     chr19:18979355-19006953 -  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GDF1  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblGDF1 - 19p13.11 [CytoView hg19]  GDF1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIGDF1 [Mapview hg19]  GDF1 [Mapview hg38]
OMIM187500   208530   217095   602880   613854   
Gene and transcription
Genbank (Entrez)AB209169 M62302
RefSeq transcript (Entrez)NM_001492
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_012070 NG_033056 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)GDF1
Cluster EST : UnigeneHs.412355 [ NCBI ]
CGAP (NCI)Hs.412355
Alternative Splicing GalleryENSG00000130283
Gene ExpressionGDF1 [ NCBI-GEO ]   GDF1 [ EBI - ARRAY_EXPRESS ]   GDF1 [ SEEK ]   GDF1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2657
GTEX Portal (Tissue expression)GDF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP27539 (Uniprot)
NextProtP27539  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP27539
Splice isoforms : SwissVarP27539 (Swissvar)
PhosPhoSitePlusP27539
Domaine pattern : Prosite (Expaxy)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine    Inhibin_asu    TGF-b_C    TGF-beta-rel    TGFb_CS   
Domain families : Pfam (Sanger)TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM Disease mutations2657
Blocks (Seattle)GDF1
SuperfamilyP27539
Human Protein AtlasENSG00000130283
Peptide AtlasP27539
HPRD04194
IPIIPI00019442   IPI00556045   
Protein Interaction databases
DIP (DOE-UCLA)P27539
IntAct (EBI)P27539
FunCoupENSG00000130283
BioGRIDGDF1
STRING (EMBL)GDF1
ZODIACGDF1
Ontologies - Pathways
QuickGOP27539
Ontology : AmiGOcytokine activity  transforming growth factor beta receptor binding  extracellular space  growth factor activity  positive regulation of pathway-restricted SMAD protein phosphorylation  BMP signaling pathway  regulation of apoptotic process  regulation of MAPK cascade  cell development  SMAD protein signal transduction  
Ontology : EGO-EBIcytokine activity  transforming growth factor beta receptor binding  extracellular space  growth factor activity  positive regulation of pathway-restricted SMAD protein phosphorylation  BMP signaling pathway  regulation of apoptotic process  regulation of MAPK cascade  cell development  SMAD protein signal transduction  
NDEx Network
Atlas of Cancer Signalling NetworkGDF1
Wikipedia pathwaysGDF1
Orthology - Evolution
OrthoDB2657
GeneTree (enSembl)ENSG00000130283
Phylogenetic Trees/Animal Genes : TreeFamGDF1
Homologs : HomoloGeneGDF1
Homology/Alignments : Family Browser (UCSC)GDF1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGDF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDF1
dbVarGDF1
ClinVarGDF1
1000_GenomesGDF1 
Exome Variant ServerGDF1
ExAC (Exome Aggregation Consortium)GDF1 (select the gene name)
Genetic variants : HAPMAP2657
Genomic Variants (DGV)GDF1 [DGVbeta]
Mutations
ICGC Data PortalGDF1 
TCGA Data PortalGDF1 
Broad Tumor PortalGDF1
OASIS PortalGDF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDF1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GDF1
DgiDB (Drug Gene Interaction Database)GDF1
DoCM (Curated mutations)GDF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDF1 (select a term)
intoGenGDF1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:18979355-19006953  ENSG00000130283
CONAN: Copy Number AnalysisGDF1 
Mutations and Diseases : HGMDGDF1
OMIM187500    208530    217095    602880    613854   
MedgenGDF1
Genetic Testing Registry GDF1
NextProtP27539 [Medical]
TSGene2657
GENETestsGDF1
Huge Navigator GDF1 [HugePedia]
snp3D : Map Gene to Disease2657
BioCentury BCIQGDF1
ClinGenGDF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2657
Chemical/Pharm GKB GenePA28629
Clinical trialGDF1
Miscellaneous
canSAR (ICR)GDF1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDF1
EVEXGDF1
GoPubMedGDF1
iHOPGDF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:03:47 CEST 2016

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