Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GDF3 (growth differentiation factor 3)

Identity

Other namesKFS3
MCOP7
MCOPCB6
HGNC (Hugo) GDF3
LocusID (NCBI) 9573
Location 12p13.31
Location_base_pair Starts at 7842381 and ends at 7848360 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GDF3   4218
Entrez_Gene (NCBI)GDF3  9573  growth differentiation factor 3
Cards
GeneCards (Weizmann)GDF3
Ensembl (Hinxton)ENSG00000184344 [Gene_View]  chr12:7842381-7848360 [Contig_View]  GDF3 [Vega]
AceView (NCBI)GDF3
Genatlas (Paris)GDF3
SOURCE (Stanford)NM_020634
Genomic and cartography
GoldenPath (UCSC)GDF3  -  12p13.31   chr12:7842381-7848360 -  12p13.31   [Description]    (hg19-Feb_2009)
EnsemblGDF3 - 12p13.31 [CytoView]
Mapping of homologs : NCBIGDF3 [Mapview]
OMIM606522   613702   613703   613704   
Gene and transcription
Genbank (Entrez)AF110641 AF263538 AY358875 BC030959 DQ892661
RefSeq transcript (SRS)NM_020634
RefSeq transcript (Entrez)NM_020634
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NG_028167 NT_009714 NW_001838051 NW_004078074
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_028167 NT_009714 NW_001838051 NW_004078074
Consensus coding sequences : CCDS (NCBI)GDF3
Cluster EST : UnigeneHs.86232 [ SRS ] Hs.86232 [ NCBI ]
CGAP (NCI)Hs.86232
Alternative Splicing : Fast-db (Paris)GSHG0007221
Alternative Splicing GalleryENSG00000184344
Gene ExpressionGDF3 [ NCBI-GEO ]   GDF3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR23 (SRS) Q9NR23 (Uniprot)
NextProtQ9NR23
With graphics : InterProQ9NR23
Splice isoforms : SwissVarQ9NR23(Swissvar)
Domaine pattern : Prosite (SRS)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domaine pattern : Prosite (Expaxy)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domains : Interpro (SRS)Inhibin_asu    TGF-b_C    TGF-b_N    TGF-beta-rel    TGFb_CS   
Domains : Interpro (EBI)Inhibin_asu    TGF-b_C    TGF-b_N    TGF-beta-rel    TGFb_CS   
Related proteins : CluSTrQ9NR23
Domain families : Pfam (SRS)TGF_beta (PF00019)    TGFb_propeptide (PF00688)   
Domain families : Pfam (Sanger)TGF_beta (PF00019)    TGFb_propeptide (PF00688)   
Domain families : Pfam (NCBI)pfam00019    pfam00688   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM9573
Blocks (Seattle)Q9NR23
Human Protein AtlasENSG00000184344
HPRD05938
IPIIPI00299659   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR23
IntAct (EBI)Q9NR23
FunCoupENSG00000184344
REACTOMEGDF3
Protein Interaction Database9573
BioGRIDGDF3
InParanoidQ9NR23
Interologous Interaction database Q9NR23
IntegromeDBGDF3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GDF3
SNP (GeneSNP Utah)GDF3
SNP : HGBaseGDF3
Genetic variants : HAPMAPGDF3
Somatic Mutations in Cancer : COSMICGDF3 
CONAN: Copy Number AnalysisGDF3 
Mutations and Diseases : HGMDGDF3
OMIM606522    613702    613703    613704   
GENETests606522    613702    613703    613704   
Disease Genetic AssociationGDF3
Huge Navigator GDF3 [HugePedia]  GDF3 [HugeCancerGEM]
Genomic VariantsGDF3  GDF3 [DGVbeta]
snp3D : Map Gene to Disease9573
General knowledge
Homologs : HomoloGeneGDF3
Homology/Alignments : Family Browser (UCSC)GDF3
Phylogenetic Trees/Animal Genes : TreeFamGDF3
Chemical/Protein Interactions : CTD9573
Chemical/Pharm GKB GenePA28633
Clinical trialGDF3
Cancer Resource (Charite)ENSG00000184344
Ontology : AmiGOskeletal system development  eye development  in utero embryonic development  response to dietary excess  cytokine activity  extracellular space  signal transduction  endoderm development  mesoderm development  growth factor activity  notochord development  somite rostral/caudal axis specification  growth  formation of anatomical boundary  primitive streak formation  
Ontology : EGO-EBIskeletal system development  eye development  in utero embryonic development  response to dietary excess  cytokine activity  extracellular space  signal transduction  endoderm development  mesoderm development  growth factor activity  notochord development  somite rostral/caudal axis specification  growth  formation of anatomical boundary  primitive streak formation  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneGDF3
iHOPGDF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:49:22 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.