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GDF5OS (growth differentiation factor 5 opposite strand)

Identity

Other alias-
HGNC (Hugo) GDF5OS
LocusID (NCBI) 554250
Atlas_Id 63744
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 35433029 and ends at 35435452 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDF5OS   33435
Cards
Entrez_Gene (NCBI)GDF5OS  554250  growth differentiation factor 5 opposite strand
Aliases
GeneCards (Weizmann)GDF5OS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:35433029-35435452 [Contig_View]  GDF5OS [Vega]
TCGA cBioPortalGDF5OS
AceView (NCBI)GDF5OS
Genatlas (Paris)GDF5OS
WikiGenes554250
SOURCE (Princeton)GDF5OS
Genetics Home Reference (NIH)GDF5OS
Genomic and cartography
GoldenPath hg38 (UCSC)GDF5OS  -     chr20:35433029-35435452 +  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDF5OS  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblGDF5OS - 20q11.22 [CytoView hg19]  GDF5OS - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIGDF5OS [Mapview hg19]  GDF5OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC085019 BU556542
RefSeq transcript (Entrez)NM_001350519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GDF5OS
Cluster EST : UnigeneHs.711481 [ NCBI ]
CGAP (NCI)Hs.711481
Gene ExpressionGDF5OS [ NCBI-GEO ]   GDF5OS [ EBI - ARRAY_EXPRESS ]   GDF5OS [ SEEK ]   GDF5OS [ MEM ]
Gene Expression Viewer (FireBrowse)GDF5OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554250
GTEX Portal (Tissue expression)GDF5OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U4N7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U4N7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U4N7
Splice isoforms : SwissVarQ5U4N7
PhosPhoSitePlusQ5U4N7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GDF5OS
DMDM Disease mutations554250
Blocks (Seattle)GDF5OS
SuperfamilyQ5U4N7
Peptide AtlasQ5U4N7
IPIIPI00478288   
Protein Interaction databases
DIP (DOE-UCLA)Q5U4N7
IntAct (EBI)Q5U4N7
BioGRIDGDF5OS
STRING (EMBL)GDF5OS
ZODIACGDF5OS
Ontologies - Pathways
QuickGOQ5U4N7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGDF5OS
Atlas of Cancer Signalling NetworkGDF5OS
Wikipedia pathwaysGDF5OS
Orthology - Evolution
OrthoDB554250
Phylogenetic Trees/Animal Genes : TreeFamGDF5OS
HOVERGENQ5U4N7
HOGENOMQ5U4N7
Homologs : HomoloGeneGDF5OS
Homology/Alignments : Family Browser (UCSC)GDF5OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDF5OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDF5OS
dbVarGDF5OS
ClinVarGDF5OS
1000_GenomesGDF5OS 
Exome Variant ServerGDF5OS
ExAC (Exome Aggregation Consortium)GDF5OS (select the gene name)
Genetic variants : HAPMAP554250
Genomic Variants (DGV)GDF5OS [DGVbeta]
DECIPHERGDF5OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDF5OS 
Mutations
ICGC Data PortalGDF5OS 
TCGA Data PortalGDF5OS 
Broad Tumor PortalGDF5OS
OASIS PortalGDF5OS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDF5OS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGDF5OS
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch GDF5OS
DgiDB (Drug Gene Interaction Database)GDF5OS
DoCM (Curated mutations)GDF5OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDF5OS (select a term)
intoGenGDF5OS
Cancer3DGDF5OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGDF5OS
Genetic Testing Registry GDF5OS
NextProtQ5U4N7 [Medical]
TSGene554250
GENETestsGDF5OS
Huge Navigator GDF5OS [HugePedia]
snp3D : Map Gene to Disease554250
BioCentury BCIQGDF5OS
ClinGenGDF5OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554250
Clinical trialGDF5OS
Miscellaneous
canSAR (ICR)GDF5OS (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDF5OS
EVEXGDF5OS
GoPubMedGDF5OS
iHOPGDF5OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:13:32 CEST 2017

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