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GDF9 (growth differentiation factor 9)

Identity

Other names-
HGNC (Hugo) GDF9
LocusID (NCBI) 2661
Location 5q31.1
Location_base_pair Starts at 132196878 and ends at 132200477 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GDF9   4224
Entrez_Gene (NCBI)GDF9  2661  growth differentiation factor 9
Cards
GeneCards (Weizmann)GDF9
Ensembl (Hinxton)ENSG00000164404 [Gene_View]  chr5:132196878-132200477 [Contig_View]  GDF9 [Vega]
AceView (NCBI)GDF9
Genatlas (Paris)GDF9
SOURCE (Stanford)NM_005260
Genomic and cartography
GoldenPath (UCSC)GDF9  -  5q31.1   chr5:132196878-132200477 -  5q31.1   [Description]    (hg19-Feb_2009)
EnsemblGDF9 - 5q31.1 [CytoView]
Mapping of homologs : NCBIGDF9 [Mapview]
OMIM601918   
Gene and transcription
Genbank (Entrez)AK301962 AK315973 BC096228 BC096229 BC096230
RefSeq transcript (SRS)NM_005260
RefSeq transcript (Entrez)NM_005260
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004078024
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004078024
Consensus coding sequences : CCDS (NCBI)GDF9
Cluster EST : UnigeneHs.25022 [ SRS ] Hs.25022 [ NCBI ]
CGAP (NCI)Hs.25022
Alternative Splicing : Fast-db (Paris)GSHG0025056
Alternative Splicing GalleryENSG00000164404
Gene ExpressionGDF9 [ NCBI-GEO ]   GDF9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60383 (SRS) O60383 (Uniprot)
NextProtO60383
With graphics : InterProO60383
Splice isoforms : SwissVarO60383(Swissvar)
Domaine pattern : Prosite (SRS)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domaine pattern : Prosite (Expaxy)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domains : Interpro (SRS)Growth_differentiation_fac-9    TGF-b_C    TGF-beta-rel    TGFb_CS   
Domains : Interpro (EBI)Growth_differentiation_fac-9    TGF-b_C    TGF-beta-rel    TGFb_CS   
Related proteins : CluSTrO60383
Domain families : Pfam (SRS)TGF_beta (PF00019)   
Domain families : Pfam (Sanger)TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM2661
Blocks (Seattle)O60383
Human Protein AtlasENSG00000164404
HPRD03560
IPIIPI00029127   
Protein Interaction databases
DIP (DOE-UCLA)O60383
IntAct (EBI)O60383
FunCoupENSG00000164404
REACTOMEGDF9
Protein Interaction Database2661
BioGRIDGDF9
InParanoidO60383
Interologous Interaction database O60383
IntegromeDBGDF9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GDF9
SNP (GeneSNP Utah)GDF9
SNP : HGBaseGDF9
Genetic variants : HAPMAPGDF9
Somatic Mutations in Cancer : COSMICGDF9 
CONAN: Copy Number AnalysisGDF9 
Mutations and Diseases : HGMDGDF9
OMIM601918   
GENETests601918   
Disease Genetic AssociationGDF9
Huge Navigator GDF9 [HugePedia]  GDF9 [HugeCancerGEM]
Genomic VariantsGDF9  GDF9 [DGVbeta]
snp3D : Map Gene to Disease2661
General knowledge
Homologs : HomoloGeneGDF9
Homology/Alignments : Family Browser (UCSC)GDF9
Phylogenetic Trees/Animal Genes : TreeFamGDF9
Chemical/Protein Interactions : CTD2661
Chemical/Pharm GKB GenePA28639
Clinical trialGDF9
Cancer Resource (Charite)ENSG00000164404
Ontology : AmiGOoocyte growth  cytokine activity  extracellular space  transforming growth factor beta receptor signaling pathway  female gamete generation  growth factor activity  positive regulation of cell proliferation  negative regulation of cell growth  regulation of progesterone secretion  regulation of progesterone secretion  
Ontology : EGO-EBIoocyte growth  cytokine activity  extracellular space  transforming growth factor beta receptor signaling pathway  female gamete generation  growth factor activity  positive regulation of cell proliferation  negative regulation of cell growth  regulation of progesterone secretion  regulation of progesterone secretion  
Other databases
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
PubGeneGDF9
iHOPGDF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:49:33 CEST 2013
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