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GDNF (glial cell derived neurotrophic factor)

Identity

Alias (NCBI)ATF
ATF1
ATF2
HFB1-GDNF
HSCR3
HGNC (Hugo) GDNF
HGNC Alias symbATF1
ATF2
HFB1-GDNF
HGNC Alias nameastrocyte-derived trophic factor
 glial cell line derived neurotrophic factor
 glial derived neurotrophic factor
LocusID (NCBI) 2668
Atlas_Id 40705
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 37812677 and ends at 37835491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EWSR1 (22q12.2) / GDNF (5p13.2)FUS (16p11.2) / GDNF (5p13.2)GDNF (5p13.2) / EWSR1 (22q12.2)
GDNF (5p13.2) / FUS (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)GDNF   4232
Cards
Entrez_Gene (NCBI)GDNF    glial cell derived neurotrophic factor
AliasesATF; ATF1; ATF2; HFB1-GDNF; 
HSCR3
GeneCards (Weizmann)GDNF
Ensembl hg19 (Hinxton)ENSG00000168621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168621 [Gene_View]  ENSG00000168621 [Sequence]  chr5:37812677-37835491 [Contig_View]  GDNF [Vega]
ICGC DataPortalENSG00000168621
TCGA cBioPortalGDNF
AceView (NCBI)GDNF
Genatlas (Paris)GDNF
SOURCE (Princeton)GDNF
Genetics Home Reference (NIH)GDNF
Genomic and cartography
GoldenPath hg38 (UCSC)GDNF  -     chr5:37812677-37835491 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDNF  -     5p13.2   [Description]    (hg19-Feb_2009)
GoldenPathGDNF - 5p13.2 [CytoView hg19]  GDNF - 5p13.2 [CytoView hg38]
ImmunoBaseENSG00000168621
Genome Data Viewer NCBIGDNF [Mapview hg19]  
OMIM171300   209880   600837   613711   
Gene and transcription
Genbank (Entrez)AF053748 AJ001897 AJ001898 AJ001899 AJ001900
RefSeq transcript (Entrez)NM_000514 NM_001190468 NM_001190469 NM_001278098 NM_199231 NM_199234
Consensus coding sequences : CCDS (NCBI)GDNF
Gene ExpressionGDNF [ NCBI-GEO ]   GDNF [ EBI - ARRAY_EXPRESS ]   GDNF [ SEEK ]   GDNF [ MEM ]
Gene Expression Viewer (FireBrowse)GDNF [ Firebrowse - Broad ]
GenevisibleExpression of GDNF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2668
GTEX Portal (Tissue expression)GDNF
Human Protein AtlasENSG00000168621-GDNF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GDNF
Human Protein Atlas [tissue]ENSG00000168621-GDNF [tissue]
HPRD02906
Protein Interaction databases
BioGRIDGDNF
STRING (EMBL)GDNF
ZODIACGDNF
Ontologies - Pathways
Litterature
PubMed228 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGDNF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:10:36 CEST 2021

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