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GDPD2 (glycerophosphodiester phosphodiesterase domain containing 2)

Identity

Alias_symbol (synonym)OBDPF
FLJ20207
GDE3
Other alias
HGNC (Hugo) GDPD2
LocusID (NCBI) 54857
Atlas_Id 56323
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70423031 and ends at 70433391 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDPD2   25974
Cards
Entrez_Gene (NCBI)GDPD2  54857  glycerophosphodiester phosphodiesterase domain containing 2
AliasesGDE3; OBDPF
GeneCards (Weizmann)GDPD2
Ensembl hg19 (Hinxton)ENSG00000130055 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130055 [Gene_View]  chrX:70423031-70433391 [Contig_View]  GDPD2 [Vega]
ICGC DataPortalENSG00000130055
TCGA cBioPortalGDPD2
AceView (NCBI)GDPD2
Genatlas (Paris)GDPD2
WikiGenes54857
SOURCE (Princeton)GDPD2
Genetics Home Reference (NIH)GDPD2
Genomic and cartography
GoldenPath hg38 (UCSC)GDPD2  -     chrX:70423031-70433391 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDPD2  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblGDPD2 - Xq13.1 [CytoView hg19]  GDPD2 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIGDPD2 [Mapview hg19]  GDPD2 [Mapview hg38]
OMIM300940   
Gene and transcription
Genbank (Entrez)AB048363 AI277430 AK000214 AK097293 AK299255
RefSeq transcript (Entrez)NM_001171191 NM_001171192 NM_001171193 NM_017711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GDPD2
Cluster EST : UnigeneHs.438712 [ NCBI ]
CGAP (NCI)Hs.438712
Alternative Splicing GalleryENSG00000130055
Gene ExpressionGDPD2 [ NCBI-GEO ]   GDPD2 [ EBI - ARRAY_EXPRESS ]   GDPD2 [ SEEK ]   GDPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)GDPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54857
GTEX Portal (Tissue expression)GDPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCC8
Splice isoforms : SwissVarQ9HCC8
Catalytic activity : Enzyme3.1.4.43 [ Enzyme-Expasy ]   3.1.4.433.1.4.43 [ IntEnz-EBI ]   3.1.4.43 [ BRENDA ]   3.1.4.43 [ KEGG ]   
PhosPhoSitePlusQ9HCC8
Domaine pattern : Prosite (Expaxy)GP_PDE (PS51704)   
Domains : Interpro (EBI)GlyceroP-diester-Pdiesterase    GP_PDE_dom    PLC-like_Pdiesterase_TIM-brl   
Domain families : Pfam (Sanger)GDPD (PF03009)   
Domain families : Pfam (NCBI)pfam03009   
Conserved Domain (NCBI)GDPD2
DMDM Disease mutations54857
Blocks (Seattle)GDPD2
SuperfamilyQ9HCC8
Human Protein AtlasENSG00000130055
Peptide AtlasQ9HCC8
HPRD06528
IPIIPI00102275   IPI00954842   IPI00911110   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCC8
IntAct (EBI)Q9HCC8
FunCoupENSG00000130055
BioGRIDGDPD2
STRING (EMBL)GDPD2
ZODIACGDPD2
Ontologies - Pathways
QuickGOQ9HCC8
Ontology : AmiGOcytoplasm  actin filament  plasma membrane  lipid metabolic process  glycerophosphodiester phosphodiesterase activity  integral component of membrane  lamellipodium  positive regulation of osteoblast differentiation  metal ion binding  glycerophosphoinositol inositolphosphodiesterase activity  actin filament reorganization  
Ontology : EGO-EBIcytoplasm  actin filament  plasma membrane  lipid metabolic process  glycerophosphodiester phosphodiesterase activity  integral component of membrane  lamellipodium  positive regulation of osteoblast differentiation  metal ion binding  glycerophosphoinositol inositolphosphodiesterase activity  actin filament reorganization  
NDEx NetworkGDPD2
Atlas of Cancer Signalling NetworkGDPD2
Wikipedia pathwaysGDPD2
Orthology - Evolution
OrthoDB54857
GeneTree (enSembl)ENSG00000130055
Phylogenetic Trees/Animal Genes : TreeFamGDPD2
HOVERGENQ9HCC8
HOGENOMQ9HCC8
Homologs : HomoloGeneGDPD2
Homology/Alignments : Family Browser (UCSC)GDPD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDPD2
dbVarGDPD2
ClinVarGDPD2
1000_GenomesGDPD2 
Exome Variant ServerGDPD2
ExAC (Exome Aggregation Consortium)GDPD2 (select the gene name)
Genetic variants : HAPMAP54857
Genomic Variants (DGV)GDPD2 [DGVbeta]
DECIPHERGDPD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDPD2 
Mutations
ICGC Data PortalGDPD2 
TCGA Data PortalGDPD2 
Broad Tumor PortalGDPD2
OASIS PortalGDPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGDPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GDPD2
DgiDB (Drug Gene Interaction Database)GDPD2
DoCM (Curated mutations)GDPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDPD2 (select a term)
intoGenGDPD2
Cancer3DGDPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300940   
Orphanet
MedgenGDPD2
Genetic Testing Registry GDPD2
NextProtQ9HCC8 [Medical]
TSGene54857
GENETestsGDPD2
Target ValidationGDPD2
Huge Navigator GDPD2 [HugePedia]
snp3D : Map Gene to Disease54857
BioCentury BCIQGDPD2
ClinGenGDPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54857
Chemical/Pharm GKB GenePA134907263
Clinical trialGDPD2
Miscellaneous
canSAR (ICR)GDPD2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDPD2
EVEXGDPD2
GoPubMedGDPD2
iHOPGDPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:09:40 CEST 2017

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