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GDPD3 (glycerophosphodiester phosphodiesterase domain containing 3)

Identity

Alias_symbol (synonym)MGC4171
Other aliasGDE7
HGNC (Hugo) GDPD3
LocusID (NCBI) 79153
Atlas_Id 63748
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30104810 and ends at 30113557 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDPD3   28638
Cards
Entrez_Gene (NCBI)GDPD3  79153  glycerophosphodiester phosphodiesterase domain containing 3
AliasesGDE7
GeneCards (Weizmann)GDPD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:30104810-30113557 [Contig_View]  GDPD3 [Vega]
TCGA cBioPortalGDPD3
AceView (NCBI)GDPD3
Genatlas (Paris)GDPD3
WikiGenes79153
SOURCE (Princeton)GDPD3
Genetics Home Reference (NIH)GDPD3
Genomic and cartography
GoldenPath hg38 (UCSC)GDPD3  -     chr16:30104810-30113557 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDPD3  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblGDPD3 - 16p11.2 [CytoView hg19]  GDPD3 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIGDPD3 [Mapview hg19]  GDPD3 [Mapview hg38]
OMIM616318   
Gene and transcription
Genbank (Entrez)AK026256 AK225450 BC002714 Z36775
RefSeq transcript (Entrez)NM_024307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GDPD3
Cluster EST : UnigeneHs.289015 [ NCBI ]
CGAP (NCI)Hs.289015
Gene ExpressionGDPD3 [ NCBI-GEO ]   GDPD3 [ EBI - ARRAY_EXPRESS ]   GDPD3 [ SEEK ]   GDPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)GDPD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79153
GTEX Portal (Tissue expression)GDPD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L5L3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L5L3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L5L3
Splice isoforms : SwissVarQ7L5L3
PhosPhoSitePlusQ7L5L3
Domaine pattern : Prosite (Expaxy)GP_PDE (PS51704)   
Domains : Interpro (EBI)GP_PDE_dom    PLC-like_Pdiesterase_TIM-brl   
Domain families : Pfam (Sanger)GDPD (PF03009)   
Domain families : Pfam (NCBI)pfam03009   
Conserved Domain (NCBI)GDPD3
DMDM Disease mutations79153
Blocks (Seattle)GDPD3
SuperfamilyQ7L5L3
Peptide AtlasQ7L5L3
HPRD08330
IPIIPI00549640   IPI00013306   
Protein Interaction databases
DIP (DOE-UCLA)Q7L5L3
IntAct (EBI)Q7L5L3
BioGRIDGDPD3
STRING (EMBL)GDPD3
ZODIACGDPD3
Ontologies - Pathways
QuickGOQ7L5L3
Ontology : AmiGOlipid metabolic process  phosphoric diester hydrolase activity  integral component of membrane  metal ion binding  extracellular exosome  
Ontology : EGO-EBIlipid metabolic process  phosphoric diester hydrolase activity  integral component of membrane  metal ion binding  extracellular exosome  
NDEx NetworkGDPD3
Atlas of Cancer Signalling NetworkGDPD3
Wikipedia pathwaysGDPD3
Orthology - Evolution
OrthoDB79153
Phylogenetic Trees/Animal Genes : TreeFamGDPD3
HOVERGENQ7L5L3
HOGENOMQ7L5L3
Homologs : HomoloGeneGDPD3
Homology/Alignments : Family Browser (UCSC)GDPD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDPD3
dbVarGDPD3
ClinVarGDPD3
1000_GenomesGDPD3 
Exome Variant ServerGDPD3
ExAC (Exome Aggregation Consortium)GDPD3 (select the gene name)
Genetic variants : HAPMAP79153
Genomic Variants (DGV)GDPD3 [DGVbeta]
DECIPHERGDPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDPD3 
Mutations
ICGC Data PortalGDPD3 
TCGA Data PortalGDPD3 
Broad Tumor PortalGDPD3
OASIS PortalGDPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGDPD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GDPD3
DgiDB (Drug Gene Interaction Database)GDPD3
DoCM (Curated mutations)GDPD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDPD3 (select a term)
intoGenGDPD3
Cancer3DGDPD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616318   
Orphanet
MedgenGDPD3
Genetic Testing Registry GDPD3
NextProtQ7L5L3 [Medical]
TSGene79153
GENETestsGDPD3
Target ValidationGDPD3
Huge Navigator GDPD3 [HugePedia]
snp3D : Map Gene to Disease79153
BioCentury BCIQGDPD3
ClinGenGDPD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79153
Chemical/Pharm GKB GenePA142671741
Clinical trialGDPD3
Miscellaneous
canSAR (ICR)GDPD3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDPD3
EVEXGDPD3
GoPubMedGDPD3
iHOPGDPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:18 CEST 2017

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