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GDPD4 (glycerophosphodiester phosphodiesterase domain containing 4)

Identity

Alias_symbol (synonym)GDE6
Other alias
HGNC (Hugo) GDPD4
LocusID (NCBI) 220032
Atlas_Id 63749
Location 11q13.5  [Link to chromosome band 11q13]
Location_base_pair Starts at 76927603 and ends at 76998463 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TADA2A (17q12) / GDPD4 (11q13.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDPD4   24849
Cards
Entrez_Gene (NCBI)GDPD4  220032  glycerophosphodiester phosphodiesterase domain containing 4
AliasesGDE6
GeneCards (Weizmann)GDPD4
Ensembl hg19 (Hinxton)ENSG00000178795 [Gene_View]  chr11:76927603-76998463 [Contig_View]  GDPD4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178795 [Gene_View]  chr11:76927603-76998463 [Contig_View]  GDPD4 [Vega]
ICGC DataPortalENSG00000178795
TCGA cBioPortalGDPD4
AceView (NCBI)GDPD4
Genatlas (Paris)GDPD4
WikiGenes220032
SOURCE (Princeton)GDPD4
Genetics Home Reference (NIH)GDPD4
Genomic and cartography
GoldenPath hg19 (UCSC)GDPD4  -     chr11:76927603-76998463 -  11q13.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GDPD4  -     11q13.5   [Description]    (hg38-Dec_2013)
EnsemblGDPD4 - 11q13.5 [CytoView hg19]  GDPD4 - 11q13.5 [CytoView hg38]
Mapping of homologs : NCBIGDPD4 [Mapview hg19]  GDPD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY313782 AY326450 BC160091
RefSeq transcript (Entrez)NM_182833
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)GDPD4
Cluster EST : UnigeneHs.249795 [ NCBI ]
CGAP (NCI)Hs.249795
Alternative Splicing GalleryENSG00000178795
Gene ExpressionGDPD4 [ NCBI-GEO ]   GDPD4 [ EBI - ARRAY_EXPRESS ]   GDPD4 [ SEEK ]   GDPD4 [ MEM ]
Gene Expression Viewer (FireBrowse)GDPD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220032
GTEX Portal (Tissue expression)GDPD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6W3E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6W3E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6W3E5
Splice isoforms : SwissVarQ6W3E5
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ6W3E5
Domaine pattern : Prosite (Expaxy)GP_PDE (PS51704)   
Domains : Interpro (EBI)GlyceroP-diester-Pdiesterase    GP_PDE_dom    PLC-like_Pdiesterase_TIM-brl   
Domain families : Pfam (Sanger)GDPD (PF03009)   
Domain families : Pfam (NCBI)pfam03009   
Conserved Domain (NCBI)GDPD4
DMDM Disease mutations220032
Blocks (Seattle)GDPD4
SuperfamilyQ6W3E5
Human Protein AtlasENSG00000178795
Peptide AtlasQ6W3E5
HPRD17320
IPIIPI00179751   IPI00747320   
Protein Interaction databases
DIP (DOE-UCLA)Q6W3E5
IntAct (EBI)Q6W3E5
FunCoupENSG00000178795
BioGRIDGDPD4
STRING (EMBL)GDPD4
ZODIACGDPD4
Ontologies - Pathways
QuickGOQ6W3E5
Ontology : AmiGOglycerol metabolic process  lipid metabolic process  glycerophosphodiester phosphodiesterase activity  integral component of membrane  metal ion binding  
Ontology : EGO-EBIglycerol metabolic process  lipid metabolic process  glycerophosphodiester phosphodiesterase activity  integral component of membrane  metal ion binding  
NDEx NetworkGDPD4
Atlas of Cancer Signalling NetworkGDPD4
Wikipedia pathwaysGDPD4
Orthology - Evolution
OrthoDB220032
GeneTree (enSembl)ENSG00000178795
Phylogenetic Trees/Animal Genes : TreeFamGDPD4
HOVERGENQ6W3E5
HOGENOMQ6W3E5
Homologs : HomoloGeneGDPD4
Homology/Alignments : Family Browser (UCSC)GDPD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDPD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDPD4
dbVarGDPD4
ClinVarGDPD4
1000_GenomesGDPD4 
Exome Variant ServerGDPD4
ExAC (Exome Aggregation Consortium)GDPD4 (select the gene name)
Genetic variants : HAPMAP220032
Genomic Variants (DGV)GDPD4 [DGVbeta]
DECIPHER (Syndromes)11:76927603-76998463  ENSG00000178795
CONAN: Copy Number AnalysisGDPD4 
Mutations
ICGC Data PortalGDPD4 
TCGA Data PortalGDPD4 
Broad Tumor PortalGDPD4
OASIS PortalGDPD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDPD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGDPD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GDPD4
DgiDB (Drug Gene Interaction Database)GDPD4
DoCM (Curated mutations)GDPD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDPD4 (select a term)
intoGenGDPD4
Cancer3DGDPD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGDPD4
Genetic Testing Registry GDPD4
NextProtQ6W3E5 [Medical]
TSGene220032
GENETestsGDPD4
Huge Navigator GDPD4 [HugePedia]
snp3D : Map Gene to Disease220032
BioCentury BCIQGDPD4
ClinGenGDPD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220032
Chemical/Pharm GKB GenePA142671742
Clinical trialGDPD4
Miscellaneous
canSAR (ICR)GDPD4 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDPD4
EVEXGDPD4
GoPubMedGDPD4
iHOPGDPD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:59 CET 2017

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