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GDPD5 (glycerophosphodiester phosphodiesterase domain containing 5)

Identity

Alias (NCBI)GDE2
PP1665
HGNC (Hugo) GDPD5
HGNC Alias symbPP1665
GDE2
LocusID (NCBI) 81544
Atlas_Id 53254
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 75434640 and ends at 75525941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARRB1 (11q13.4) / GDPD5 (11q13.4)CHKA (11q13.2) / GDPD5 (11q13.4)CSF1R (5q32) / GDPD5 (11q13.4)
FBXL20 (17q12) / GDPD5 (11q13.4)GDPD5 (11q13.4) / GDPD5 (11q13.4)KLHL35 (11q13.4) / GDPD5 (11q13.4)
LAMC1 (1q25.3) / GDPD5 (11q13.4)MRPL48 (11q13.4) / GDPD5 (11q13.4)ARRB1 11q13.4 / GDPD5 11q13.4
CHKA 11q13.2 / GDPD5 11q13.4MRPL48 11q13.4 / GDPD5 11q13.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GDPD5   28804
Cards
Entrez_Gene (NCBI)GDPD5    glycerophosphodiester phosphodiesterase domain containing 5
AliasesGDE2; PP1665
GeneCards (Weizmann)GDPD5
Ensembl hg19 (Hinxton)ENSG00000158555 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158555 [Gene_View]  ENSG00000158555 [Sequence]  chr11:75434640-75525941 [Contig_View]  GDPD5 [Vega]
ICGC DataPortalENSG00000158555
TCGA cBioPortalGDPD5
AceView (NCBI)GDPD5
Genatlas (Paris)GDPD5
SOURCE (Princeton)GDPD5
Genetics Home Reference (NIH)GDPD5
Genomic and cartography
GoldenPath hg38 (UCSC)GDPD5  -     chr11:75434640-75525941 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDPD5  -     11q13.4   [Description]    (hg19-Feb_2009)
GoldenPathGDPD5 - 11q13.4 [CytoView hg19]  GDPD5 - 11q13.4 [CytoView hg38]
ImmunoBaseENSG00000158555
Genome Data Viewer NCBIGDPD5 [Mapview hg19]  
OMIM609632   
Gene and transcription
Genbank (Entrez)AF217989 AF289614 AF318351 AF318377 AF451987
RefSeq transcript (Entrez)NM_001351167 NM_001351168 NM_030792
Consensus coding sequences : CCDS (NCBI)GDPD5
Gene ExpressionGDPD5 [ NCBI-GEO ]   GDPD5 [ EBI - ARRAY_EXPRESS ]   GDPD5 [ SEEK ]   GDPD5 [ MEM ]
Gene Expression Viewer (FireBrowse)GDPD5 [ Firebrowse - Broad ]
GenevisibleExpression of GDPD5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81544
GTEX Portal (Tissue expression)GDPD5
Human Protein AtlasENSG00000158555-GDPD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTR4
PhosPhoSitePlusQ8WTR4
Domaine pattern : Prosite (Expaxy)GP_PDE (PS51704)   
Domains : Interpro (EBI)GP_PDE_dom    PLC-like_Pdiesterase_TIM-brl   
Domain families : Pfam (Sanger)GDPD (PF03009)   
Domain families : Pfam (NCBI)pfam03009   
Conserved Domain (NCBI)GDPD5
SuperfamilyQ8WTR4
AlphaFold pdb e-kbQ8WTR4   
Human Protein Atlas [tissue]ENSG00000158555-GDPD5 [tissue]
HPRD15159
Protein Interaction databases
DIP (DOE-UCLA)Q8WTR4
IntAct (EBI)Q8WTR4
BioGRIDGDPD5
STRING (EMBL)GDPD5
ZODIACGDPD5
Ontologies - Pathways
QuickGOQ8WTR4
Ontology : AmiGOphosphatidylinositol phospholipase C activity  protein binding  lipid metabolic process  nervous system development  endomembrane system  integral component of membrane  growth cone  glycerophosphocholine phosphodiesterase activity  perinuclear region of cytoplasm  
Ontology : EGO-EBIphosphatidylinositol phospholipase C activity  protein binding  lipid metabolic process  nervous system development  endomembrane system  integral component of membrane  growth cone  glycerophosphocholine phosphodiesterase activity  perinuclear region of cytoplasm  
NDEx NetworkGDPD5
Atlas of Cancer Signalling NetworkGDPD5
Wikipedia pathwaysGDPD5
Orthology - Evolution
OrthoDB81544
GeneTree (enSembl)ENSG00000158555
Phylogenetic Trees/Animal Genes : TreeFamGDPD5
Homologs : HomoloGeneGDPD5
Homology/Alignments : Family Browser (UCSC)GDPD5
Gene fusions - Rearrangements
Fusion : MitelmanARRB1/GDPD5 [11q13.4/11q13.4]  
Fusion : MitelmanCHKA/GDPD5 [11q13.2/11q13.4]  
Fusion : MitelmanFBXL20/GDPD5 [17q12/11q13.4]  
Fusion : MitelmanMRPL48/GDPD5 [11q13.4/11q13.4]  
Fusion : QuiverGDPD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDPD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDPD5
dbVarGDPD5
ClinVarGDPD5
MonarchGDPD5
1000_GenomesGDPD5 
Exome Variant ServerGDPD5
GNOMAD BrowserENSG00000158555
Varsome BrowserGDPD5
ACMGGDPD5 variants
VarityQ8WTR4
Genomic Variants (DGV)GDPD5 [DGVbeta]
DECIPHERGDPD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDPD5 
Mutations
ICGC Data PortalGDPD5 
TCGA Data PortalGDPD5 
Broad Tumor PortalGDPD5
OASIS PortalGDPD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGDPD5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGDPD5
Mutations and Diseases : HGMDGDPD5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGDPD5
DgiDB (Drug Gene Interaction Database)GDPD5
DoCM (Curated mutations)GDPD5
CIViC (Clinical Interpretations of Variants in Cancer)GDPD5
Cancer3DGDPD5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609632   
Orphanet
DisGeNETGDPD5
MedgenGDPD5
Genetic Testing Registry GDPD5
NextProtQ8WTR4 [Medical]
GENETestsGDPD5
Target ValidationGDPD5
Huge Navigator GDPD5 [HugePedia]
ClinGenGDPD5
Clinical trials, drugs, therapy
MyCancerGenomeGDPD5
Protein Interactions : CTDGDPD5
Pharm GKB GenePA142671743
PharosQ8WTR4
Clinical trialGDPD5
Miscellaneous
canSAR (ICR)GDPD5
HarmonizomeGDPD5
DataMed IndexGDPD5
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGDPD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:10:36 CEST 2021

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