Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GDPGP1 (GDP-D-glucose phosphorylase 1)

Identity

Alias_namesC15orf58
chromosome 15 open reading frame 58
Other aliasVTC2
HGNC (Hugo) GDPGP1
LocusID (NCBI) 390637
Atlas_Id 63750
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90234255 and ends at 90242080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GDPGP1 (15q26.1) / TTLL13P (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GDPGP1   34360
Cards
Entrez_Gene (NCBI)GDPGP1  390637  GDP-D-glucose phosphorylase 1
AliasesC15orf58; VTC2
GeneCards (Weizmann)GDPGP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:90234255-90242080 [Contig_View]  GDPGP1 [Vega]
TCGA cBioPortalGDPGP1
AceView (NCBI)GDPGP1
Genatlas (Paris)GDPGP1
WikiGenes390637
SOURCE (Princeton)GDPGP1
Genetics Home Reference (NIH)GDPGP1
Genomic and cartography
GoldenPath hg38 (UCSC)GDPGP1  -     chr15:90234255-90242080 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GDPGP1  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblGDPGP1 - 15q26.1 [CytoView hg19]  GDPGP1 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIGDPGP1 [Mapview hg19]  GDPGP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130527 BC127821 BC148394 BC153017 BX440248
RefSeq transcript (Entrez)NM_001013657 NM_001322811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GDPGP1
Cluster EST : UnigeneHs.304673 [ NCBI ]
CGAP (NCI)Hs.304673
Gene ExpressionGDPGP1 [ NCBI-GEO ]   GDPGP1 [ EBI - ARRAY_EXPRESS ]   GDPGP1 [ SEEK ]   GDPGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GDPGP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390637
GTEX Portal (Tissue expression)GDPGP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNW5
Splice isoforms : SwissVarQ6ZNW5
PhosPhoSitePlusQ6ZNW5
Domains : Interpro (EBI)GDPGP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GDPGP1
DMDM Disease mutations390637
Blocks (Seattle)GDPGP1
SuperfamilyQ6ZNW5
Peptide AtlasQ6ZNW5
HPRD18400
IPIIPI00418644   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNW5
IntAct (EBI)Q6ZNW5
BioGRIDGDPGP1
STRING (EMBL)GDPGP1
ZODIACGDPGP1
Ontologies - Pathways
QuickGOQ6ZNW5
Ontology : AmiGOnucleotide binding  guanyl-nucleotide exchange factor activity  cytoplasm  cytoplasm  glucose metabolic process  nucleotidyltransferase activity  hydrolase activity  positive regulation of GTPase activity  GDP-D-glucose phosphorylase activity  
Ontology : EGO-EBInucleotide binding  guanyl-nucleotide exchange factor activity  cytoplasm  cytoplasm  glucose metabolic process  nucleotidyltransferase activity  hydrolase activity  positive regulation of GTPase activity  GDP-D-glucose phosphorylase activity  
NDEx NetworkGDPGP1
Atlas of Cancer Signalling NetworkGDPGP1
Wikipedia pathwaysGDPGP1
Orthology - Evolution
OrthoDB390637
Phylogenetic Trees/Animal Genes : TreeFamGDPGP1
HOVERGENQ6ZNW5
HOGENOMQ6ZNW5
Homologs : HomoloGeneGDPGP1
Homology/Alignments : Family Browser (UCSC)GDPGP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGDPGP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GDPGP1
dbVarGDPGP1
ClinVarGDPGP1
1000_GenomesGDPGP1 
Exome Variant ServerGDPGP1
ExAC (Exome Aggregation Consortium)GDPGP1 (select the gene name)
Genetic variants : HAPMAP390637
Genomic Variants (DGV)GDPGP1 [DGVbeta]
DECIPHERGDPGP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGDPGP1 
Mutations
ICGC Data PortalGDPGP1 
TCGA Data PortalGDPGP1 
Broad Tumor PortalGDPGP1
OASIS PortalGDPGP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGDPGP1
BioMutasearch GDPGP1
DgiDB (Drug Gene Interaction Database)GDPGP1
DoCM (Curated mutations)GDPGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GDPGP1 (select a term)
intoGenGDPGP1
Cancer3DGDPGP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGDPGP1
Genetic Testing Registry GDPGP1
NextProtQ6ZNW5 [Medical]
TSGene390637
GENETestsGDPGP1
Huge Navigator GDPGP1 [HugePedia]
snp3D : Map Gene to Disease390637
BioCentury BCIQGDPGP1
ClinGenGDPGP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390637
Chemical/Pharm GKB GenePA162378247
Clinical trialGDPGP1
Miscellaneous
canSAR (ICR)GDPGP1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGDPGP1
EVEXGDPGP1
GoPubMedGDPGP1
iHOPGDPGP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:13:33 CEST 2017

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