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GEMIN4 (gem nuclear organelle associated protein 4)

Identity

Alias_namesgem (nuclear organelle) associated protein 4
Alias_symbol (synonym)HHRF-1
DKFZP434B131
p97
DKFZP434D174
HC56
HCAP1
Other alias
HGNC (Hugo) GEMIN4
LocusID (NCBI) 50628
Atlas_Id 43612
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 647661 and ends at 655501 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GEMIN4   15717
Cards
Entrez_Gene (NCBI)GEMIN4  50628  gem nuclear organelle associated protein 4
AliasesHC56; HCAP1; HHRF-1; p97
GeneCards (Weizmann)GEMIN4
Ensembl hg19 (Hinxton)ENSG00000179409 [Gene_View]  chr17:647661-655501 [Contig_View]  GEMIN4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179409 [Gene_View]  chr17:647661-655501 [Contig_View]  GEMIN4 [Vega]
ICGC DataPortalENSG00000179409
TCGA cBioPortalGEMIN4
AceView (NCBI)GEMIN4
Genatlas (Paris)GEMIN4
WikiGenes50628
SOURCE (Princeton)GEMIN4
Genetics Home Reference (NIH)GEMIN4
Genomic and cartography
GoldenPath hg19 (UCSC)GEMIN4  -     chr17:647661-655501 -  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GEMIN4  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblGEMIN4 - 17p13.3 [CytoView hg19]  GEMIN4 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIGEMIN4 [Mapview hg19]  GEMIN4 [Mapview hg38]
OMIM606969   
Gene and transcription
Genbank (Entrez)AF173856 AF177341 AK302722 AL080150 AL080167
RefSeq transcript (Entrez)NM_015721
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)GEMIN4
Cluster EST : UnigeneHs.499620 [ NCBI ]
CGAP (NCI)Hs.499620
Alternative Splicing GalleryENSG00000179409
Gene ExpressionGEMIN4 [ NCBI-GEO ]   GEMIN4 [ EBI - ARRAY_EXPRESS ]   GEMIN4 [ SEEK ]   GEMIN4 [ MEM ]
Gene Expression Viewer (FireBrowse)GEMIN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50628
GTEX Portal (Tissue expression)GEMIN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57678   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57678  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57678
Splice isoforms : SwissVarP57678
PhosPhoSitePlusP57678
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GEMIN4
DMDM Disease mutations50628
Blocks (Seattle)GEMIN4
SuperfamilyP57678
Human Protein AtlasENSG00000179409
Peptide AtlasP57678
HPRD07370
IPIIPI00027717   IPI00908627   
Protein Interaction databases
DIP (DOE-UCLA)P57678
IntAct (EBI)P57678
FunCoupENSG00000179409
BioGRIDGEMIN4
STRING (EMBL)GEMIN4
ZODIACGEMIN4
Ontologies - Pathways
QuickGOP57678
Ontology : AmiGOspliceosomal snRNP assembly  spliceosomal snRNP assembly  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  cytosol  rRNA processing  membrane  small nuclear ribonucleoprotein complex  SMN complex  SMN-Sm protein complex  nuclear import  extracellular exosome  Gemini of coiled bodies  
Ontology : EGO-EBIspliceosomal snRNP assembly  spliceosomal snRNP assembly  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  cytosol  rRNA processing  membrane  small nuclear ribonucleoprotein complex  SMN complex  SMN-Sm protein complex  nuclear import  extracellular exosome  Gemini of coiled bodies  
Pathways : KEGGRNA transport   
NDEx NetworkGEMIN4
Atlas of Cancer Signalling NetworkGEMIN4
Wikipedia pathwaysGEMIN4
Orthology - Evolution
OrthoDB50628
GeneTree (enSembl)ENSG00000179409
Phylogenetic Trees/Animal Genes : TreeFamGEMIN4
HOVERGENP57678
HOGENOMP57678
Homologs : HomoloGeneGEMIN4
Homology/Alignments : Family Browser (UCSC)GEMIN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGEMIN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GEMIN4
dbVarGEMIN4
ClinVarGEMIN4
1000_GenomesGEMIN4 
Exome Variant ServerGEMIN4
ExAC (Exome Aggregation Consortium)GEMIN4 (select the gene name)
Genetic variants : HAPMAP50628
Genomic Variants (DGV)GEMIN4 [DGVbeta]
DECIPHER (Syndromes)17:647661-655501  ENSG00000179409
CONAN: Copy Number AnalysisGEMIN4 
Mutations
ICGC Data PortalGEMIN4 
TCGA Data PortalGEMIN4 
Broad Tumor PortalGEMIN4
OASIS PortalGEMIN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGEMIN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGEMIN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GEMIN4
DgiDB (Drug Gene Interaction Database)GEMIN4
DoCM (Curated mutations)GEMIN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GEMIN4 (select a term)
intoGenGEMIN4
Cancer3DGEMIN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606969   
Orphanet
MedgenGEMIN4
Genetic Testing Registry GEMIN4
NextProtP57678 [Medical]
TSGene50628
GENETestsGEMIN4
Huge Navigator GEMIN4 [HugePedia]
snp3D : Map Gene to Disease50628
BioCentury BCIQGEMIN4
ClinGenGEMIN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50628
Chemical/Pharm GKB GenePA28646
Clinical trialGEMIN4
Miscellaneous
canSAR (ICR)GEMIN4 (select the gene name)
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGEMIN4
EVEXGEMIN4
GoPubMedGEMIN4
iHOPGEMIN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:18 CET 2017

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