Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GEMIN5 (gem nuclear organelle associated protein 5)

Identity

Alias_namesgem (nuclear organelle) associated protein 5
Other aliasGEMIN-5
HGNC (Hugo) GEMIN5
LocusID (NCBI) 25929
Atlas_Id 47248
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 154887416 and ends at 154938216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCL21 (9p13.3) / GEMIN5 (5q33.2)GEMIN5 (5q33.2) / TACC1 (8p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GEMIN5   20043
Cards
Entrez_Gene (NCBI)GEMIN5  25929  gem nuclear organelle associated protein 5
AliasesGEMIN-5
GeneCards (Weizmann)GEMIN5
Ensembl hg19 (Hinxton)ENSG00000082516 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000082516 [Gene_View]  chr5:154887416-154938216 [Contig_View]  GEMIN5 [Vega]
ICGC DataPortalENSG00000082516
TCGA cBioPortalGEMIN5
AceView (NCBI)GEMIN5
Genatlas (Paris)GEMIN5
WikiGenes25929
SOURCE (Princeton)GEMIN5
Genetics Home Reference (NIH)GEMIN5
Genomic and cartography
GoldenPath hg38 (UCSC)GEMIN5  -     chr5:154887416-154938216 -  5q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GEMIN5  -     5q33.2   [Description]    (hg19-Feb_2009)
EnsemblGEMIN5 - 5q33.2 [CytoView hg19]  GEMIN5 - 5q33.2 [CytoView hg38]
Mapping of homologs : NCBIGEMIN5 [Mapview hg19]  GEMIN5 [Mapview hg38]
OMIM607005   
Gene and transcription
Genbank (Entrez)AK022748 AK074066 AK315101 AL117665 AY063750
RefSeq transcript (Entrez)NM_001252156 NM_015465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GEMIN5
Cluster EST : UnigeneHs.483921 [ NCBI ]
CGAP (NCI)Hs.483921
Alternative Splicing GalleryENSG00000082516
Gene ExpressionGEMIN5 [ NCBI-GEO ]   GEMIN5 [ EBI - ARRAY_EXPRESS ]   GEMIN5 [ SEEK ]   GEMIN5 [ MEM ]
Gene Expression Viewer (FireBrowse)GEMIN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25929
GTEX Portal (Tissue expression)GEMIN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEQ6
Splice isoforms : SwissVarQ8TEQ6
PhosPhoSitePlusQ8TEQ6
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    G-protein_beta_WD-40_rep    Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)GEMIN5
DMDM Disease mutations25929
Blocks (Seattle)GEMIN5
PDB (SRS)5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
PDB (PDBSum)5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
PDB (IMB)5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
PDB (RSDB)5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
Structural Biology KnowledgeBase5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
SCOP (Structural Classification of Proteins)5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
CATH (Classification of proteins structures)5GXH    5GXI    5H1J    5H1K    5H1L    5H1M    5H3S    5H3T    5H3U    5TEE    5TEF    5THA   
SuperfamilyQ8TEQ6
Human Protein AtlasENSG00000082516
Peptide AtlasQ8TEQ6
HPRD06109
IPIIPI00291783   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEQ6
IntAct (EBI)Q8TEQ6
FunCoupENSG00000082516
BioGRIDGEMIN5
STRING (EMBL)GEMIN5
ZODIACGEMIN5
Ontologies - Pathways
QuickGOQ8TEQ6
Ontology : AmiGORNA 7-methylguanosine cap binding  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  RNA binding  mRNA 3'-UTR binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  translation  regulation of translation  protein complex assembly  membrane  nuclear body  snRNA binding  cytosolic large ribosomal subunit  U1 snRNA binding  U4 snRNA binding  U4atac snRNA binding  SMN complex  SMN-Gemin2 complex  SMN-Sm protein complex  ribosome binding  nuclear import  Gemini of coiled bodies  
Ontology : EGO-EBIRNA 7-methylguanosine cap binding  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  RNA binding  mRNA 3'-UTR binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  translation  regulation of translation  protein complex assembly  membrane  nuclear body  snRNA binding  cytosolic large ribosomal subunit  U1 snRNA binding  U4 snRNA binding  U4atac snRNA binding  SMN complex  SMN-Gemin2 complex  SMN-Sm protein complex  ribosome binding  nuclear import  Gemini of coiled bodies  
Pathways : KEGGRNA transport   
NDEx NetworkGEMIN5
Atlas of Cancer Signalling NetworkGEMIN5
Wikipedia pathwaysGEMIN5
Orthology - Evolution
OrthoDB25929
GeneTree (enSembl)ENSG00000082516
Phylogenetic Trees/Animal Genes : TreeFamGEMIN5
HOVERGENQ8TEQ6
HOGENOMQ8TEQ6
Homologs : HomoloGeneGEMIN5
Homology/Alignments : Family Browser (UCSC)GEMIN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGEMIN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GEMIN5
dbVarGEMIN5
ClinVarGEMIN5
1000_GenomesGEMIN5 
Exome Variant ServerGEMIN5
ExAC (Exome Aggregation Consortium)GEMIN5 (select the gene name)
Genetic variants : HAPMAP25929
Genomic Variants (DGV)GEMIN5 [DGVbeta]
DECIPHERGEMIN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGEMIN5 
Mutations
ICGC Data PortalGEMIN5 
TCGA Data PortalGEMIN5 
Broad Tumor PortalGEMIN5
OASIS PortalGEMIN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGEMIN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGEMIN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GEMIN5
DgiDB (Drug Gene Interaction Database)GEMIN5
DoCM (Curated mutations)GEMIN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GEMIN5 (select a term)
intoGenGEMIN5
Cancer3DGEMIN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607005   
Orphanet
MedgenGEMIN5
Genetic Testing Registry GEMIN5
NextProtQ8TEQ6 [Medical]
TSGene25929
GENETestsGEMIN5
Target ValidationGEMIN5
Huge Navigator GEMIN5 [HugePedia]
snp3D : Map Gene to Disease25929
BioCentury BCIQGEMIN5
ClinGenGEMIN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25929
Chemical/Pharm GKB GenePA134945791
Clinical trialGEMIN5
Miscellaneous
canSAR (ICR)GEMIN5 (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGEMIN5
EVEXGEMIN5
GoPubMedGEMIN5
iHOPGEMIN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:35:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.