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GEMIN6 (gem nuclear organelle associated protein 6)

Identity

Alias_namesgem (nuclear organelle) associated protein 6
Alias_symbol (synonym)FLJ23459
Other alias-
HGNC (Hugo) GEMIN6
LocusID (NCBI) 79833
Atlas_Id 46701
Location 2p22.1  [Link to chromosome band 2p22]
Location_base_pair Starts at 38778185 and ends at 38781964 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GEMIN6   20044
Cards
Entrez_Gene (NCBI)GEMIN6  79833  gem nuclear organelle associated protein 6
Aliases
GeneCards (Weizmann)GEMIN6
Ensembl hg19 (Hinxton)ENSG00000152147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152147 [Gene_View]  chr2:38778185-38781964 [Contig_View]  GEMIN6 [Vega]
ICGC DataPortalENSG00000152147
TCGA cBioPortalGEMIN6
AceView (NCBI)GEMIN6
Genatlas (Paris)GEMIN6
WikiGenes79833
SOURCE (Princeton)GEMIN6
Genetics Home Reference (NIH)GEMIN6
Genomic and cartography
GoldenPath hg38 (UCSC)GEMIN6  -     chr2:38778185-38781964 +  2p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GEMIN6  -     2p22.1   [Description]    (hg19-Feb_2009)
EnsemblGEMIN6 - 2p22.1 [CytoView hg19]  GEMIN6 - 2p22.1 [CytoView hg38]
Mapping of homologs : NCBIGEMIN6 [Mapview hg19]  GEMIN6 [Mapview hg38]
OMIM607006   
Gene and transcription
Genbank (Entrez)AF453443 AK027112 AK315627 BC018195 BC029584
RefSeq transcript (Entrez)NM_024775
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GEMIN6
Cluster EST : UnigeneHs.143818 [ NCBI ]
CGAP (NCI)Hs.143818
Alternative Splicing GalleryENSG00000152147
Gene ExpressionGEMIN6 [ NCBI-GEO ]   GEMIN6 [ EBI - ARRAY_EXPRESS ]   GEMIN6 [ SEEK ]   GEMIN6 [ MEM ]
Gene Expression Viewer (FireBrowse)GEMIN6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79833
GTEX Portal (Tissue expression)GEMIN6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXD5
Splice isoforms : SwissVarQ8WXD5
PhosPhoSitePlusQ8WXD5
Domains : Interpro (EBI)Gemin6   
Domain families : Pfam (Sanger)Gemin6 (PF06372)   
Domain families : Pfam (NCBI)pfam06372   
Conserved Domain (NCBI)GEMIN6
DMDM Disease mutations79833
Blocks (Seattle)GEMIN6
PDB (SRS)1Y96   
PDB (PDBSum)1Y96   
PDB (IMB)1Y96   
PDB (RSDB)1Y96   
Structural Biology KnowledgeBase1Y96   
SCOP (Structural Classification of Proteins)1Y96   
CATH (Classification of proteins structures)1Y96   
SuperfamilyQ8WXD5
Human Protein AtlasENSG00000152147
Peptide AtlasQ8WXD5
HPRD06110
IPIIPI00103087   IPI00917281   IPI00916543   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXD5
IntAct (EBI)Q8WXD5
FunCoupENSG00000152147
BioGRIDGEMIN6
STRING (EMBL)GEMIN6
ZODIACGEMIN6
Ontologies - Pathways
QuickGOQ8WXD5
Ontology : AmiGOspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  nuclear body  SMN complex  SMN-Sm protein complex  nuclear import  Gemini of coiled bodies  
Ontology : EGO-EBIspliceosomal complex assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  protein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  nuclear body  SMN complex  SMN-Sm protein complex  nuclear import  Gemini of coiled bodies  
Pathways : KEGGRNA transport   
NDEx NetworkGEMIN6
Atlas of Cancer Signalling NetworkGEMIN6
Wikipedia pathwaysGEMIN6
Orthology - Evolution
OrthoDB79833
GeneTree (enSembl)ENSG00000152147
Phylogenetic Trees/Animal Genes : TreeFamGEMIN6
HOVERGENQ8WXD5
HOGENOMQ8WXD5
Homologs : HomoloGeneGEMIN6
Homology/Alignments : Family Browser (UCSC)GEMIN6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGEMIN6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GEMIN6
dbVarGEMIN6
ClinVarGEMIN6
1000_GenomesGEMIN6 
Exome Variant ServerGEMIN6
ExAC (Exome Aggregation Consortium)GEMIN6 (select the gene name)
Genetic variants : HAPMAP79833
Genomic Variants (DGV)GEMIN6 [DGVbeta]
DECIPHERGEMIN6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGEMIN6 
Mutations
ICGC Data PortalGEMIN6 
TCGA Data PortalGEMIN6 
Broad Tumor PortalGEMIN6
OASIS PortalGEMIN6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGEMIN6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGEMIN6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GEMIN6
DgiDB (Drug Gene Interaction Database)GEMIN6
DoCM (Curated mutations)GEMIN6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GEMIN6 (select a term)
intoGenGEMIN6
Cancer3DGEMIN6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607006   
Orphanet
MedgenGEMIN6
Genetic Testing Registry GEMIN6
NextProtQ8WXD5 [Medical]
TSGene79833
GENETestsGEMIN6
Target ValidationGEMIN6
Huge Navigator GEMIN6 [HugePedia]
snp3D : Map Gene to Disease79833
BioCentury BCIQGEMIN6
ClinGenGEMIN6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79833
Chemical/Pharm GKB GenePA134952855
Clinical trialGEMIN6
Miscellaneous
canSAR (ICR)GEMIN6 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGEMIN6
EVEXGEMIN6
GoPubMedGEMIN6
iHOPGEMIN6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:06 CEST 2017

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