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GEMIN7 (gem nuclear organelle associated protein 7)

Identity

Alias_namesgem (nuclear organelle) associated protein 7
Alias_symbol (synonym)FLJ13956
Other aliasSIP3
HGNC (Hugo) GEMIN7
LocusID (NCBI) 79760
Atlas_Id 54329
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45582530 and ends at 45594782 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GEMIN7 (19q13.32) / SLC39A14 (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GEMIN7   20045
Cards
Entrez_Gene (NCBI)GEMIN7  79760  gem nuclear organelle associated protein 7
AliasesSIP3
GeneCards (Weizmann)GEMIN7
Ensembl hg19 (Hinxton)ENSG00000142252 [Gene_View]  chr19:45582530-45594782 [Contig_View]  GEMIN7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142252 [Gene_View]  chr19:45582530-45594782 [Contig_View]  GEMIN7 [Vega]
ICGC DataPortalENSG00000142252
TCGA cBioPortalGEMIN7
AceView (NCBI)GEMIN7
Genatlas (Paris)GEMIN7
WikiGenes79760
SOURCE (Princeton)GEMIN7
Genetics Home Reference (NIH)GEMIN7
Genomic and cartography
GoldenPath hg19 (UCSC)GEMIN7  -     chr19:45582530-45594782 +  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GEMIN7  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblGEMIN7 - 19q13.32 [CytoView hg19]  GEMIN7 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIGEMIN7 [Mapview hg19]  GEMIN7 [Mapview hg38]
OMIM607419   
Gene and transcription
Genbank (Entrez)AK024018 AW297699 AY114106 BC007793 BM009097
RefSeq transcript (Entrez)NM_001007269 NM_001007270 NM_001319054 NM_001319055 NM_024707
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)GEMIN7
Cluster EST : UnigeneHs.466919 [ NCBI ]
CGAP (NCI)Hs.466919
Alternative Splicing GalleryENSG00000142252
Gene ExpressionGEMIN7 [ NCBI-GEO ]   GEMIN7 [ EBI - ARRAY_EXPRESS ]   GEMIN7 [ SEEK ]   GEMIN7 [ MEM ]
Gene Expression Viewer (FireBrowse)GEMIN7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79760
GTEX Portal (Tissue expression)GEMIN7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H840   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H840  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H840
Splice isoforms : SwissVarQ9H840
PhosPhoSitePlusQ9H840
Domains : Interpro (EBI)SMN_gemin7   
Domain families : Pfam (Sanger)Gemin7 (PF11095)   
Domain families : Pfam (NCBI)pfam11095   
Domain structure : Prodom (Prabi Lyon)SMN_cplx_gem-assoc_protein_7 (PD296126)   
Conserved Domain (NCBI)GEMIN7
DMDM Disease mutations79760
Blocks (Seattle)GEMIN7
PDB (SRS)1Y96   
PDB (PDBSum)1Y96   
PDB (IMB)1Y96   
PDB (RSDB)1Y96   
Structural Biology KnowledgeBase1Y96   
SCOP (Structural Classification of Proteins)1Y96   
CATH (Classification of proteins structures)1Y96   
SuperfamilyQ9H840
Human Protein AtlasENSG00000142252
Peptide AtlasQ9H840
HPRD07600
IPIIPI00003027   
Protein Interaction databases
DIP (DOE-UCLA)Q9H840
IntAct (EBI)Q9H840
FunCoupENSG00000142252
BioGRIDGEMIN7
STRING (EMBL)GEMIN7
ZODIACGEMIN7
Ontologies - Pathways
QuickGOQ9H840
Ontology : AmiGOspliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  nuclear body  SMN complex  SMN-Sm protein complex  nuclear import  Gemini of coiled bodies  
Ontology : EGO-EBIspliceosomal snRNP assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  nuclear body  SMN complex  SMN-Sm protein complex  nuclear import  Gemini of coiled bodies  
Pathways : KEGGRNA transport   
NDEx NetworkGEMIN7
Atlas of Cancer Signalling NetworkGEMIN7
Wikipedia pathwaysGEMIN7
Orthology - Evolution
OrthoDB79760
GeneTree (enSembl)ENSG00000142252
Phylogenetic Trees/Animal Genes : TreeFamGEMIN7
HOVERGENQ9H840
HOGENOMQ9H840
Homologs : HomoloGeneGEMIN7
Homology/Alignments : Family Browser (UCSC)GEMIN7
Gene fusions - Rearrangements
Fusion : MitelmanGEMIN7/SLC39A14 [19q13.32/8p21.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGEMIN7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GEMIN7
dbVarGEMIN7
ClinVarGEMIN7
1000_GenomesGEMIN7 
Exome Variant ServerGEMIN7
ExAC (Exome Aggregation Consortium)GEMIN7 (select the gene name)
Genetic variants : HAPMAP79760
Genomic Variants (DGV)GEMIN7 [DGVbeta]
DECIPHER (Syndromes)19:45582530-45594782  ENSG00000142252
CONAN: Copy Number AnalysisGEMIN7 
Mutations
ICGC Data PortalGEMIN7 
TCGA Data PortalGEMIN7 
Broad Tumor PortalGEMIN7
OASIS PortalGEMIN7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGEMIN7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGEMIN7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GEMIN7
DgiDB (Drug Gene Interaction Database)GEMIN7
DoCM (Curated mutations)GEMIN7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GEMIN7 (select a term)
intoGenGEMIN7
Cancer3DGEMIN7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607419   
Orphanet
MedgenGEMIN7
Genetic Testing Registry GEMIN7
NextProtQ9H840 [Medical]
TSGene79760
GENETestsGEMIN7
Huge Navigator GEMIN7 [HugePedia]
snp3D : Map Gene to Disease79760
BioCentury BCIQGEMIN7
ClinGenGEMIN7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79760
Chemical/Pharm GKB GenePA134959810
Clinical trialGEMIN7
Miscellaneous
canSAR (ICR)GEMIN7 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGEMIN7
EVEXGEMIN7
GoPubMedGEMIN7
iHOPGEMIN7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:02:17 CEST 2017

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