Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GEMIN8 (gem nuclear organelle associated protein 8)

Identity

Alias (NCBI)FAM51A1
HGNC (Hugo) GEMIN8
HGNC Alias symbFLJ20514
HGNC Previous nameFAM51A1
HGNC Previous namefamily with sequence similarity 51, member A1
 gem (nuclear organelle) associated protein 8
LocusID (NCBI) 54960
Atlas_Id 63751
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 14006726 and ends at 14029916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GEMIN8   26044
Cards
Entrez_Gene (NCBI)GEMIN8    gem nuclear organelle associated protein 8
AliasesFAM51A1
GeneCards (Weizmann)GEMIN8
Ensembl hg19 (Hinxton)ENSG00000046647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000046647 [Gene_View]  ENSG00000046647 [Sequence]  chrX:14006726-14029916 [Contig_View]  GEMIN8 [Vega]
ICGC DataPortalENSG00000046647
TCGA cBioPortalGEMIN8
AceView (NCBI)GEMIN8
Genatlas (Paris)GEMIN8
SOURCE (Princeton)GEMIN8
Genetics Home Reference (NIH)GEMIN8
Genomic and cartography
GoldenPath hg38 (UCSC)GEMIN8  -     chrX:14006726-14029916 -  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GEMIN8  -     Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPathGEMIN8 - Xp22.2 [CytoView hg19]  GEMIN8 - Xp22.2 [CytoView hg38]
ImmunoBaseENSG00000046647
genome Data Viewer NCBIGEMIN8 [Mapview hg19]  
OMIM300962   
Gene and transcription
Genbank (Entrez)AK000521 AK095002 AK125062 BC003607 BC014324
RefSeq transcript (Entrez)NM_001042479 NM_001042480 NM_017856
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GEMIN8
Alternative Splicing GalleryENSG00000046647
Gene ExpressionGEMIN8 [ NCBI-GEO ]   GEMIN8 [ EBI - ARRAY_EXPRESS ]   GEMIN8 [ SEEK ]   GEMIN8 [ MEM ]
Gene Expression Viewer (FireBrowse)GEMIN8 [ Firebrowse - Broad ]
GenevisibleExpression of GEMIN8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54960
GTEX Portal (Tissue expression)GEMIN8
Human Protein AtlasENSG00000046647-GEMIN8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWZ8
Splice isoforms : SwissVarQ9NWZ8
PhosPhoSitePlusQ9NWZ8
Domains : Interpro (EBI)GEMIN8   
Domain families : Pfam (Sanger)GEMIN8 (PF15348)   
Domain families : Pfam (NCBI)pfam15348   
Conserved Domain (NCBI)GEMIN8
Blocks (Seattle)GEMIN8
SuperfamilyQ9NWZ8
Human Protein Atlas [tissue]ENSG00000046647-GEMIN8 [tissue]
Peptide AtlasQ9NWZ8
HPRD06533
IPIIPI00844046   IPI00640724   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWZ8
IntAct (EBI)Q9NWZ8
BioGRIDGEMIN8
STRING (EMBL)GEMIN8
ZODIACGEMIN8
Ontologies - Pathways
QuickGOQ9NWZ8
Ontology : AmiGOspliceosomal snRNP assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cytosol  SMN complex  SMN complex  SMN-Sm protein complex  SMN-Sm protein complex  import into nucleus  Gemini of coiled bodies  
Ontology : EGO-EBIspliceosomal snRNP assembly  spliceosomal snRNP assembly  spliceosomal snRNP assembly  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cytosol  SMN complex  SMN complex  SMN-Sm protein complex  SMN-Sm protein complex  import into nucleus  Gemini of coiled bodies  
NDEx NetworkGEMIN8
Atlas of Cancer Signalling NetworkGEMIN8
Wikipedia pathwaysGEMIN8
Orthology - Evolution
OrthoDB54960
GeneTree (enSembl)ENSG00000046647
Phylogenetic Trees/Animal Genes : TreeFamGEMIN8
HOGENOMQ9NWZ8
Homologs : HomoloGeneGEMIN8
Homology/Alignments : Family Browser (UCSC)GEMIN8
Gene fusions - Rearrangements
Fusion : QuiverGEMIN8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGEMIN8 [hg38]
dbVarGEMIN8
ClinVarGEMIN8
MonarchGEMIN8
1000_GenomesGEMIN8 
Exome Variant ServerGEMIN8
GNOMAD BrowserENSG00000046647
Varsome BrowserGEMIN8
Genomic Variants (DGV)GEMIN8 [DGVbeta]
DECIPHERGEMIN8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGEMIN8 
Mutations
ICGC Data PortalGEMIN8 
TCGA Data PortalGEMIN8 
Broad Tumor PortalGEMIN8
OASIS PortalGEMIN8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGEMIN8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGEMIN8
Mutations and Diseases : HGMDGEMIN8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GEMIN8
DgiDB (Drug Gene Interaction Database)GEMIN8
DoCM (Curated mutations)GEMIN8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GEMIN8 (select a term)
intoGenGEMIN8
Cancer3DGEMIN8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300962   
Orphanet
DisGeNETGEMIN8
MedgenGEMIN8
Genetic Testing Registry GEMIN8
NextProtQ9NWZ8 [Medical]
GENETestsGEMIN8
Target ValidationGEMIN8
Huge Navigator GEMIN8 [HugePedia]
ClinGenGEMIN8
Clinical trials, drugs, therapy
MyCancerGenomeGEMIN8
Protein Interactions : CTD
Pharm GKB GenePA162389344
Clinical trialGEMIN8
Miscellaneous
canSAR (ICR)GEMIN8 (select the gene name)
HarmonizomeGEMIN8
DataMed IndexGEMIN8
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGEMIN8
EVEXGEMIN8
GoPubMedGEMIN8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:55:29 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.