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GFAP (glial fibrillary acidic protein)

Identity

Alias (NCBI)ALXDRD
HGNC (Hugo) GFAP
HGNC Alias symbFLJ45472
HGNC Alias nameintermediate filament protein
LocusID (NCBI) 2670
Atlas_Id 50981
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44903159 and ends at 44915500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BBS1 (11q13.2) / GFAP (17q21.31)BTBD9 (6p21.2) / GFAP (17q21.31)DESI2 (1q44) / GFAP (17q21.31)
GFAP (17q21.31) / CPVL (7p14.3)GFAP (17q21.31) / GFAP (17q21.31)RASA3 (13q34) / GFAP (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)GFAP   4235
Cards
Entrez_Gene (NCBI)GFAP    glial fibrillary acidic protein
AliasesALXDRD
GeneCards (Weizmann)GFAP
Ensembl hg19 (Hinxton)ENSG00000131095 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131095 [Gene_View]  ENSG00000131095 [Sequence]  chr17:44903159-44915500 [Contig_View]  GFAP [Vega]
ICGC DataPortalENSG00000131095
TCGA cBioPortalGFAP
AceView (NCBI)GFAP
Genatlas (Paris)GFAP
SOURCE (Princeton)GFAP
Genetics Home Reference (NIH)GFAP
Genomic and cartography
GoldenPath hg38 (UCSC)GFAP  -     chr17:44903159-44915500 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GFAP  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathGFAP - 17q21.31 [CytoView hg19]  GFAP - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000131095
Genome Data Viewer NCBIGFAP [Mapview hg19]  
OMIM137780   203450   
Gene and transcription
Genbank (Entrez)AF419299 AJ306447 AK098380 AK098758 AK124465
RefSeq transcript (Entrez)NM_001131019 NM_001242376 NM_001363846 NM_002055
Consensus coding sequences : CCDS (NCBI)GFAP
Gene ExpressionGFAP [ NCBI-GEO ]   GFAP [ EBI - ARRAY_EXPRESS ]   GFAP [ SEEK ]   GFAP [ MEM ]
Gene Expression Viewer (FireBrowse)GFAP [ Firebrowse - Broad ]
GenevisibleExpression of GFAP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2670
GTEX Portal (Tissue expression)GFAP
Human Protein AtlasENSG00000131095-GFAP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GFAP
Human Protein Atlas [tissue]ENSG00000131095-GFAP [tissue]
HPRD00675
Protein Interaction databases
BioGRIDGFAP
STRING (EMBL)GFAP
ZODIACGFAP
Ontologies - Pathways
Litterature
PubMed287 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGFAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:10:38 CEST 2021

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