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GFOD1 (glucose-fructose oxidoreductase domain containing 1)

Identity

Alias_namesC6orf114
chromosome 6 open reading frame 114
Alias_symbol (synonym)FLJ20330
ADG-90
Other alias
HGNC (Hugo) GFOD1
LocusID (NCBI) 54438
Atlas_Id 63756
Location 6p24.1  [Link to chromosome band 6p24]
Location_base_pair Starts at 13363355 and ends at 13486183 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GFOD1 (6p24.1) / BCAS1 (20q13.2)GFOD1 (6p24.1) / CYP39A1 (6p12.3)GFOD1 CYP39A1
GFOD1 BCAS1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GFOD1   21096
Cards
Entrez_Gene (NCBI)GFOD1  54438  glucose-fructose oxidoreductase domain containing 1
AliasesADG-90; C6orf114
GeneCards (Weizmann)GFOD1
Ensembl hg19 (Hinxton)ENSG00000145990 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145990 [Gene_View]  ENSG00000145990 [Sequence]  chr6:13363355-13486183 [Contig_View]  GFOD1 [Vega]
ICGC DataPortalENSG00000145990
TCGA cBioPortalGFOD1
AceView (NCBI)GFOD1
Genatlas (Paris)GFOD1
WikiGenes54438
SOURCE (Princeton)GFOD1
Genetics Home Reference (NIH)GFOD1
Genomic and cartography
GoldenPath hg38 (UCSC)GFOD1  -     chr6:13363355-13486183 -  6p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GFOD1  -     6p24.1   [Description]    (hg19-Feb_2009)
EnsemblGFOD1 - 6p24.1 [CytoView hg19]  GFOD1 - 6p24.1 [CytoView hg38]
Mapping of homologs : NCBIGFOD1 [Mapview hg19]  GFOD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF264036 AK000337 AK027010 AK055131 AK123914
RefSeq transcript (Entrez)NM_001242628 NM_001242629 NM_001242630 NM_018988 NM_033069
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GFOD1
Cluster EST : UnigeneHs.593631 [ NCBI ]
CGAP (NCI)Hs.593631
Alternative Splicing GalleryENSG00000145990
Gene ExpressionGFOD1 [ NCBI-GEO ]   GFOD1 [ EBI - ARRAY_EXPRESS ]   GFOD1 [ SEEK ]   GFOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GFOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54438
GTEX Portal (Tissue expression)GFOD1
Human Protein AtlasENSG00000145990-GFOD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXC2
Splice isoforms : SwissVarQ9NXC2
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   
PhosPhoSitePlusQ9NXC2
Domains : Interpro (EBI)NAD(P)-bd_dom    Oxidoreductase_N    OxRdtase_C   
Domain families : Pfam (Sanger)GFO_IDH_MocA (PF01408)    GFO_IDH_MocA_C (PF02894)   
Domain families : Pfam (NCBI)pfam01408    pfam02894   
Conserved Domain (NCBI)GFOD1
DMDM Disease mutations54438
Blocks (Seattle)GFOD1
SuperfamilyQ9NXC2
Human Protein Atlas [tissue]ENSG00000145990-GFOD1 [tissue]
Peptide AtlasQ9NXC2
HPRD13574
IPIIPI00004502   IPI00641488   IPI00064091   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXC2
IntAct (EBI)Q9NXC2
FunCoupENSG00000145990
BioGRIDGFOD1
STRING (EMBL)GFOD1
ZODIACGFOD1
Ontologies - Pathways
QuickGOQ9NXC2
Ontology : AmiGOprotein binding  extracellular region  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  extracellular region  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkGFOD1
Atlas of Cancer Signalling NetworkGFOD1
Wikipedia pathwaysGFOD1
Orthology - Evolution
OrthoDB54438
GeneTree (enSembl)ENSG00000145990
Phylogenetic Trees/Animal Genes : TreeFamGFOD1
HOVERGENQ9NXC2
HOGENOMQ9NXC2
Homologs : HomoloGeneGFOD1
Homology/Alignments : Family Browser (UCSC)GFOD1
Gene fusions - Rearrangements
Fusion PortalGFOD1 CYP39A1
Fusion PortalGFOD1 BCAS1
Fusion : QuiverGFOD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGFOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GFOD1
dbVarGFOD1
ClinVarGFOD1
1000_GenomesGFOD1 
Exome Variant ServerGFOD1
ExAC (Exome Aggregation Consortium)ENSG00000145990
GNOMAD BrowserENSG00000145990
Varsome BrowserGFOD1
Genetic variants : HAPMAP54438
Genomic Variants (DGV)GFOD1 [DGVbeta]
DECIPHERGFOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGFOD1 
Mutations
ICGC Data PortalGFOD1 
TCGA Data PortalGFOD1 
Broad Tumor PortalGFOD1
OASIS PortalGFOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGFOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGFOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GFOD1
DgiDB (Drug Gene Interaction Database)GFOD1
DoCM (Curated mutations)GFOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GFOD1 (select a term)
intoGenGFOD1
Cancer3DGFOD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGFOD1
MedgenGFOD1
Genetic Testing Registry GFOD1
NextProtQ9NXC2 [Medical]
TSGene54438
GENETestsGFOD1
Target ValidationGFOD1
Huge Navigator GFOD1 [HugePedia]
snp3D : Map Gene to Disease54438
BioCentury BCIQGFOD1
ClinGenGFOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54438
Chemical/Pharm GKB GenePA128394667
Clinical trialGFOD1
Miscellaneous
canSAR (ICR)GFOD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGFOD1
EVEXGFOD1
GoPubMedGFOD1
iHOPGFOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:12 CEST 2018

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