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GFOD1 (glucose-fructose oxidoreductase domain containing 1)

Identity

Alias (NCBI)ADG-90
C6orf114
HGNC (Hugo) GFOD1
HGNC Alias symbFLJ20330
ADG-90
HGNC Previous nameC6orf114
HGNC Previous namechromosome 6 open reading frame 114
LocusID (NCBI) 54438
Atlas_Id 63756
Location 6p24.1  [Link to chromosome band 6p24]
Location_base_pair Starts at 13357830 and ends at 13487600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GFOD1 (6p24.1) / BCAS1 (20q13.2)GFOD1 (6p24.1) / CYP39A1 (6p12.3)GFOD1 CYP39A1
GFOD1 BCAS1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GFOD1   21096
Cards
Entrez_Gene (NCBI)GFOD1    glucose-fructose oxidoreductase domain containing 1
AliasesADG-90; C6orf114
GeneCards (Weizmann)GFOD1
Ensembl hg19 (Hinxton)ENSG00000145990 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145990 [Gene_View]  ENSG00000145990 [Sequence]  chr6:13357830-13487600 [Contig_View]  GFOD1 [Vega]
ICGC DataPortalENSG00000145990
TCGA cBioPortalGFOD1
AceView (NCBI)GFOD1
Genatlas (Paris)GFOD1
SOURCE (Princeton)GFOD1
Genetics Home Reference (NIH)GFOD1
Genomic and cartography
GoldenPath hg38 (UCSC)GFOD1  -     chr6:13357830-13487600 -  6p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GFOD1  -     6p24.1   [Description]    (hg19-Feb_2009)
GoldenPathGFOD1 - 6p24.1 [CytoView hg19]  GFOD1 - 6p24.1 [CytoView hg38]
ImmunoBaseENSG00000145990
Genome Data Viewer NCBIGFOD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF264036 AK000337 AK027010 AK055131 AK123914
RefSeq transcript (Entrez)NM_001242628 NM_001242629 NM_001242630 NM_018988 NM_033069
Consensus coding sequences : CCDS (NCBI)GFOD1
Gene ExpressionGFOD1 [ NCBI-GEO ]   GFOD1 [ EBI - ARRAY_EXPRESS ]   GFOD1 [ SEEK ]   GFOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GFOD1 [ Firebrowse - Broad ]
GenevisibleExpression of GFOD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54438
GTEX Portal (Tissue expression)GFOD1
Human Protein AtlasENSG00000145990-GFOD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXC2
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9NXC2
Domains : Interpro (EBI)Gfo/Idh/MocA-like_OxRdtase_C    NAD(P)-bd_dom_sf    Oxidoreductase_N   
Domain families : Pfam (Sanger)GFO_IDH_MocA (PF01408)    GFO_IDH_MocA_C (PF02894)   
Domain families : Pfam (NCBI)pfam01408    pfam02894   
Conserved Domain (NCBI)GFOD1
SuperfamilyQ9NXC2
AlphaFold pdb e-kbQ9NXC2   
Human Protein Atlas [tissue]ENSG00000145990-GFOD1 [tissue]
HPRD13574
Protein Interaction databases
DIP (DOE-UCLA)Q9NXC2
IntAct (EBI)Q9NXC2
BioGRIDGFOD1
STRING (EMBL)GFOD1
ZODIACGFOD1
Ontologies - Pathways
QuickGOQ9NXC2
Ontology : AmiGOnucleotide binding  protein binding  extracellular region  oxidoreductase activity  
Ontology : EGO-EBInucleotide binding  protein binding  extracellular region  oxidoreductase activity  
NDEx NetworkGFOD1
Atlas of Cancer Signalling NetworkGFOD1
Wikipedia pathwaysGFOD1
Orthology - Evolution
OrthoDB54438
GeneTree (enSembl)ENSG00000145990
Phylogenetic Trees/Animal Genes : TreeFamGFOD1
Homologs : HomoloGeneGFOD1
Homology/Alignments : Family Browser (UCSC)GFOD1
Gene fusions - Rearrangements
Fusion : QuiverGFOD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGFOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GFOD1
dbVarGFOD1
ClinVarGFOD1
MonarchGFOD1
1000_GenomesGFOD1 
Exome Variant ServerGFOD1
GNOMAD BrowserENSG00000145990
Varsome BrowserGFOD1
ACMGGFOD1 variants
VarityQ9NXC2
Genomic Variants (DGV)GFOD1 [DGVbeta]
DECIPHERGFOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGFOD1 
Mutations
ICGC Data PortalGFOD1 
TCGA Data PortalGFOD1 
Broad Tumor PortalGFOD1
OASIS PortalGFOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGFOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGFOD1
Mutations and Diseases : HGMDGFOD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGFOD1
DgiDB (Drug Gene Interaction Database)GFOD1
DoCM (Curated mutations)GFOD1
CIViC (Clinical Interpretations of Variants in Cancer)GFOD1
Cancer3DGFOD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGFOD1
MedgenGFOD1
Genetic Testing Registry GFOD1
NextProtQ9NXC2 [Medical]
GENETestsGFOD1
Target ValidationGFOD1
Huge Navigator GFOD1 [HugePedia]
ClinGenGFOD1
Clinical trials, drugs, therapy
MyCancerGenomeGFOD1
Protein Interactions : CTDGFOD1
Pharm GKB GenePA128394667
PharosQ9NXC2
Clinical trialGFOD1
Miscellaneous
canSAR (ICR)GFOD1
HarmonizomeGFOD1
DataMed IndexGFOD1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGFOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:51:22 CEST 2021

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