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GFOD2 (glucose-fructose oxidoreductase domain containing 2)

Identity

Alias_symbol (synonym)FLJ23802
MGC11335
Other alias-
HGNC (Hugo) GFOD2
LocusID (NCBI) 81577
Atlas_Id 63757
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67714619 and ends at 67753273 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CORO7 (16p13.3) / GFOD2 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GFOD2   28159
Cards
Entrez_Gene (NCBI)GFOD2  81577  glucose-fructose oxidoreductase domain containing 2
Aliases
GeneCards (Weizmann)GFOD2
Ensembl hg19 (Hinxton)ENSG00000141098 [Gene_View]  chr16:67714619-67753273 [Contig_View]  GFOD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141098 [Gene_View]  chr16:67714619-67753273 [Contig_View]  GFOD2 [Vega]
ICGC DataPortalENSG00000141098
TCGA cBioPortalGFOD2
AceView (NCBI)GFOD2
Genatlas (Paris)GFOD2
WikiGenes81577
SOURCE (Princeton)GFOD2
Genetics Home Reference (NIH)GFOD2
Genomic and cartography
GoldenPath hg19 (UCSC)GFOD2  -     chr16:67714619-67753273 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GFOD2  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblGFOD2 - 16q22.1 [CytoView hg19]  GFOD2 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIGFOD2 [Mapview hg19]  GFOD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074382 AK091606 AK096635 AK225997 AK307280
RefSeq transcript (Entrez)NM_001243650 NM_030819
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)GFOD2
Cluster EST : UnigeneHs.307084 [ NCBI ]
CGAP (NCI)Hs.307084
Alternative Splicing GalleryENSG00000141098
Gene ExpressionGFOD2 [ NCBI-GEO ]   GFOD2 [ EBI - ARRAY_EXPRESS ]   GFOD2 [ SEEK ]   GFOD2 [ MEM ]
Gene Expression Viewer (FireBrowse)GFOD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81577
GTEX Portal (Tissue expression)GFOD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B7J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B7J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B7J2
Splice isoforms : SwissVarQ3B7J2
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   
PhosPhoSitePlusQ3B7J2
Domains : Interpro (EBI)NAD(P)-bd_dom    Oxidoreductase_N   
Domain families : Pfam (Sanger)GFO_IDH_MocA (PF01408)   
Domain families : Pfam (NCBI)pfam01408   
Conserved Domain (NCBI)GFOD2
DMDM Disease mutations81577
Blocks (Seattle)GFOD2
SuperfamilyQ3B7J2
Human Protein AtlasENSG00000141098
Peptide AtlasQ3B7J2
HPRD14419
IPIIPI00154833   IPI00641718   
Protein Interaction databases
DIP (DOE-UCLA)Q3B7J2
IntAct (EBI)Q3B7J2
FunCoupENSG00000141098
BioGRIDGFOD2
STRING (EMBL)GFOD2
ZODIACGFOD2
Ontologies - Pathways
QuickGOQ3B7J2
Ontology : AmiGOproteinaceous extracellular matrix  oxidoreductase activity  extracellular matrix organization  oxidation-reduction process  
Ontology : EGO-EBIproteinaceous extracellular matrix  oxidoreductase activity  extracellular matrix organization  oxidation-reduction process  
NDEx NetworkGFOD2
Atlas of Cancer Signalling NetworkGFOD2
Wikipedia pathwaysGFOD2
Orthology - Evolution
OrthoDB81577
GeneTree (enSembl)ENSG00000141098
Phylogenetic Trees/Animal Genes : TreeFamGFOD2
HOVERGENQ3B7J2
HOGENOMQ3B7J2
Homologs : HomoloGeneGFOD2
Homology/Alignments : Family Browser (UCSC)GFOD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGFOD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GFOD2
dbVarGFOD2
ClinVarGFOD2
1000_GenomesGFOD2 
Exome Variant ServerGFOD2
ExAC (Exome Aggregation Consortium)GFOD2 (select the gene name)
Genetic variants : HAPMAP81577
Genomic Variants (DGV)GFOD2 [DGVbeta]
DECIPHER (Syndromes)16:67714619-67753273  ENSG00000141098
CONAN: Copy Number AnalysisGFOD2 
Mutations
ICGC Data PortalGFOD2 
TCGA Data PortalGFOD2 
Broad Tumor PortalGFOD2
OASIS PortalGFOD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGFOD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGFOD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GFOD2
DgiDB (Drug Gene Interaction Database)GFOD2
DoCM (Curated mutations)GFOD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GFOD2 (select a term)
intoGenGFOD2
Cancer3DGFOD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGFOD2
Genetic Testing Registry GFOD2
NextProtQ3B7J2 [Medical]
TSGene81577
GENETestsGFOD2
Huge Navigator GFOD2 [HugePedia]
snp3D : Map Gene to Disease81577
BioCentury BCIQGFOD2
ClinGenGFOD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81577
Chemical/Pharm GKB GenePA144596430
Clinical trialGFOD2
Miscellaneous
canSAR (ICR)GFOD2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGFOD2
EVEXGFOD2
GoPubMedGFOD2
iHOPGFOD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:00 CET 2017

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