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GFRA3 (GDNF family receptor alpha 3)

Identity

Alias_symbol (synonym)GFRa-3
Other aliasGDNFR3
HGNC (Hugo) GFRA3
LocusID (NCBI) 2676
Atlas_Id 51496
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 138252380 and ends at 138274564 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GFRA3   4245
Cards
Entrez_Gene (NCBI)GFRA3  2676  GDNF family receptor alpha 3
AliasesGDNFR3
GeneCards (Weizmann)GFRA3
Ensembl hg19 (Hinxton)ENSG00000146013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146013 [Gene_View]  chr5:138252380-138274564 [Contig_View]  GFRA3 [Vega]
ICGC DataPortalENSG00000146013
TCGA cBioPortalGFRA3
AceView (NCBI)GFRA3
Genatlas (Paris)GFRA3
WikiGenes2676
SOURCE (Princeton)GFRA3
Genetics Home Reference (NIH)GFRA3
Genomic and cartography
GoldenPath hg38 (UCSC)GFRA3  -     chr5:138252380-138274564 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GFRA3  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblGFRA3 - 5q31.2 [CytoView hg19]  GFRA3 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIGFRA3 [Mapview hg19]  GFRA3 [Mapview hg38]
OMIM605710   
Gene and transcription
Genbank (Entrez)AF051767 AF086292 AK297693 AK314022 AW020606
RefSeq transcript (Entrez)NM_001496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GFRA3
Cluster EST : UnigeneHs.58042 [ NCBI ]
CGAP (NCI)Hs.58042
Alternative Splicing GalleryENSG00000146013
Gene ExpressionGFRA3 [ NCBI-GEO ]   GFRA3 [ EBI - ARRAY_EXPRESS ]   GFRA3 [ SEEK ]   GFRA3 [ MEM ]
Gene Expression Viewer (FireBrowse)GFRA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2676
GTEX Portal (Tissue expression)GFRA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60609   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60609  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60609
Splice isoforms : SwissVarO60609
PhosPhoSitePlusO60609
Domains : Interpro (EBI)GDNF/GAS1    GDNF_rcpt    GDNF_rcpt_A3   
Domain families : Pfam (Sanger)GDNF (PF02351)   
Domain families : Pfam (NCBI)pfam02351   
Domain families : Smart (EMBL)GDNF (SM00907)  
Conserved Domain (NCBI)GFRA3
DMDM Disease mutations2676
Blocks (Seattle)GFRA3
PDB (SRS)2GH0   
PDB (PDBSum)2GH0   
PDB (IMB)2GH0   
PDB (RSDB)2GH0   
Structural Biology KnowledgeBase2GH0   
SCOP (Structural Classification of Proteins)2GH0   
CATH (Classification of proteins structures)2GH0   
SuperfamilyO60609
Human Protein AtlasENSG00000146013
Peptide AtlasO60609
HPRD10420
IPIIPI00445716   IPI00445717   
Protein Interaction databases
DIP (DOE-UCLA)O60609
IntAct (EBI)O60609
FunCoupENSG00000146013
BioGRIDGFRA3
STRING (EMBL)GFRA3
ZODIACGFRA3
Ontologies - Pathways
QuickGOO60609
Ontology : AmiGOMAPK cascade  neuron migration  Ras guanyl-nucleotide exchange factor activity  receptor binding  cytosol  plasma membrane  plasma membrane  signal transduction  nervous system development  axon guidance  peripheral nervous system development  axon guidance receptor activity  external side of plasma membrane  extrinsic component of membrane  anchored component of membrane  positive regulation of GTPase activity  sympathetic nervous system development  
Ontology : EGO-EBIMAPK cascade  neuron migration  Ras guanyl-nucleotide exchange factor activity  receptor binding  cytosol  plasma membrane  plasma membrane  signal transduction  nervous system development  axon guidance  peripheral nervous system development  axon guidance receptor activity  external side of plasma membrane  extrinsic component of membrane  anchored component of membrane  positive regulation of GTPase activity  sympathetic nervous system development  
NDEx NetworkGFRA3
Atlas of Cancer Signalling NetworkGFRA3
Wikipedia pathwaysGFRA3
Orthology - Evolution
OrthoDB2676
GeneTree (enSembl)ENSG00000146013
Phylogenetic Trees/Animal Genes : TreeFamGFRA3
HOVERGENO60609
HOGENOMO60609
Homologs : HomoloGeneGFRA3
Homology/Alignments : Family Browser (UCSC)GFRA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGFRA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GFRA3
dbVarGFRA3
ClinVarGFRA3
1000_GenomesGFRA3 
Exome Variant ServerGFRA3
ExAC (Exome Aggregation Consortium)GFRA3 (select the gene name)
Genetic variants : HAPMAP2676
Genomic Variants (DGV)GFRA3 [DGVbeta]
DECIPHERGFRA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGFRA3 
Mutations
ICGC Data PortalGFRA3 
TCGA Data PortalGFRA3 
Broad Tumor PortalGFRA3
OASIS PortalGFRA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGFRA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGFRA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GFRA3
DgiDB (Drug Gene Interaction Database)GFRA3
DoCM (Curated mutations)GFRA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GFRA3 (select a term)
intoGenGFRA3
Cancer3DGFRA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605710   
Orphanet
MedgenGFRA3
Genetic Testing Registry GFRA3
NextProtO60609 [Medical]
TSGene2676
GENETestsGFRA3
Target ValidationGFRA3
Huge Navigator GFRA3 [HugePedia]
snp3D : Map Gene to Disease2676
BioCentury BCIQGFRA3
ClinGenGFRA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2676
Chemical/Pharm GKB GenePA28655
Clinical trialGFRA3
Miscellaneous
canSAR (ICR)GFRA3 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGFRA3
EVEXGFRA3
GoPubMedGFRA3
iHOPGFRA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:54:13 CEST 2017

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