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GGA1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1)

Identity

Other alias-
HGNC (Hugo) GGA1
LocusID (NCBI) 26088
Atlas_Id 63763
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 37608474 and ends at 37633564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTF3 (5q13.2) / GGA1 (22q13.1)EIF4G3 (1p36.12) / GGA1 (22q13.1)GCAT (22q13.1) / GGA1 (22q13.1)
GGA1 (22q13.1) / TRIOBP (22q13.1)SLC41A2 (12q23.3) / GGA1 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGA1   17842
Cards
Entrez_Gene (NCBI)GGA1  26088  golgi associated, gamma adaptin ear containing, ARF binding protein 1
Aliases
GeneCards (Weizmann)GGA1
Ensembl hg19 (Hinxton)ENSG00000100083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100083 [Gene_View]  chr22:37608474-37633564 [Contig_View]  GGA1 [Vega]
ICGC DataPortalENSG00000100083
TCGA cBioPortalGGA1
AceView (NCBI)GGA1
Genatlas (Paris)GGA1
WikiGenes26088
SOURCE (Princeton)GGA1
Genetics Home Reference (NIH)GGA1
Genomic and cartography
GoldenPath hg38 (UCSC)GGA1  -     chr22:37608474-37633564 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGA1  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblGGA1 - 22q13.1 [CytoView hg19]  GGA1 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIGGA1 [Mapview hg19]  GGA1 [Mapview hg38]
OMIM606004   
Gene and transcription
Genbank (Entrez)AF190862 AF218584 AF233521 AK075256 AK092417
RefSeq transcript (Entrez)NM_001001560 NM_001001561 NM_001172687 NM_001172688 NM_013365
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGA1
Cluster EST : UnigeneHs.499158 [ NCBI ]
CGAP (NCI)Hs.499158
Alternative Splicing GalleryENSG00000100083
Gene ExpressionGGA1 [ NCBI-GEO ]   GGA1 [ EBI - ARRAY_EXPRESS ]   GGA1 [ SEEK ]   GGA1 [ MEM ]
Gene Expression Viewer (FireBrowse)GGA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26088
GTEX Portal (Tissue expression)GGA1
Human Protein AtlasENSG00000100083-GGA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJY5
Splice isoforms : SwissVarQ9UJY5
PhosPhoSitePlusQ9UJY5
Domaine pattern : Prosite (Expaxy)GAE (PS50180)    GAT (PS50909)    VHS (PS50179)   
Domains : Interpro (EBI)Clathrin_a/b/g-adaptin_app_Ig    Clathrin_g-adaptin_app    Coatomer/clathrin_app_Ig-like    ENTH_VHS    GAT_dom    VHS_dom   
Domain families : Pfam (Sanger)Alpha_adaptinC2 (PF02883)    GAT (PF03127)    VHS (PF00790)   
Domain families : Pfam (NCBI)pfam02883    pfam03127    pfam00790   
Domain families : Smart (EMBL)Alpha_adaptinC2 (SM00809)  VHS (SM00288)  
Conserved Domain (NCBI)GGA1
DMDM Disease mutations26088
Blocks (Seattle)GGA1
PDB (SRS)1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
PDB (PDBSum)1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
PDB (IMB)1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
PDB (RSDB)1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
Structural Biology KnowledgeBase1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
SCOP (Structural Classification of Proteins)1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
CATH (Classification of proteins structures)1J2J    1JWF    1JWG    1NA8    1NAF    1NWM    1O3X    1OM9    1OXZ    1PY1    1UJJ    1UJK    1X79    2DWX    2DWY    3G2S    3G2T    3G2U    3G2V    3G2W   
SuperfamilyQ9UJY5
Human Protein Atlas [tissue]ENSG00000100083-GGA1 [tissue]
Peptide AtlasQ9UJY5
HPRD12078
IPIIPI00744361   IPI00216337   IPI00956080   IPI00384670   IPI00878834   IPI00878329   IPI00878527   IPI00879367   IPI00879478   IPI00879325   IPI00879458   IPI00878957   IPI00879104   IPI00879926   IPI00880067   IPI01014800   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJY5
IntAct (EBI)Q9UJY5
FunCoupENSG00000100083
BioGRIDGGA1
STRING (EMBL)GGA1
ZODIACGGA1
Ontologies - Pathways
QuickGOQ9UJY5
Ontology : AmiGOmolecular_function  protein binding  nucleoplasm  Golgi apparatus  intracellular protein transport  endosome membrane  membrane  vesicle-mediated transport  clathrin adaptor complex  ADP-ribosylation factor binding  early endosome membrane  intracellular membrane-bounded organelle  protein complex  cellular protein metabolic process  positive regulation of protein catabolic process  protein heterodimerization activity  membrane organization  toxin transport  
Ontology : EGO-EBImolecular_function  protein binding  nucleoplasm  Golgi apparatus  intracellular protein transport  endosome membrane  membrane  vesicle-mediated transport  clathrin adaptor complex  ADP-ribosylation factor binding  early endosome membrane  intracellular membrane-bounded organelle  protein complex  cellular protein metabolic process  positive regulation of protein catabolic process  protein heterodimerization activity  membrane organization  toxin transport  
Pathways : KEGGLysosome   
NDEx NetworkGGA1
Atlas of Cancer Signalling NetworkGGA1
Wikipedia pathwaysGGA1
Orthology - Evolution
OrthoDB26088
GeneTree (enSembl)ENSG00000100083
Phylogenetic Trees/Animal Genes : TreeFamGGA1
HOVERGENQ9UJY5
HOGENOMQ9UJY5
Homologs : HomoloGeneGGA1
Homology/Alignments : Family Browser (UCSC)GGA1
Gene fusions - Rearrangements
Tumor Fusion PortalGGA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGA1
dbVarGGA1
ClinVarGGA1
1000_GenomesGGA1 
Exome Variant ServerGGA1
ExAC (Exome Aggregation Consortium)ENSG00000100083
GNOMAD BrowserENSG00000100083
Genetic variants : HAPMAP26088
Genomic Variants (DGV)GGA1 [DGVbeta]
DECIPHERGGA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGA1 
Mutations
ICGC Data PortalGGA1 
TCGA Data PortalGGA1 
Broad Tumor PortalGGA1
OASIS PortalGGA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGGA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGGA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGA1
DgiDB (Drug Gene Interaction Database)GGA1
DoCM (Curated mutations)GGA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGA1 (select a term)
intoGenGGA1
Cancer3DGGA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606004   
Orphanet
DisGeNETGGA1
MedgenGGA1
Genetic Testing Registry GGA1
NextProtQ9UJY5 [Medical]
TSGene26088
GENETestsGGA1
Target ValidationGGA1
Huge Navigator GGA1 [HugePedia]
snp3D : Map Gene to Disease26088
BioCentury BCIQGGA1
ClinGenGGA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26088
Chemical/Pharm GKB GenePA28657
Clinical trialGGA1
Miscellaneous
canSAR (ICR)GGA1 (select the gene name)
Probes
Litterature
PubMed92 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGA1
EVEXGGA1
GoPubMedGGA1
iHOPGGA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:40 CET 2017

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