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GGA1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1)

Identity

Alias (NCBI)-
HGNC (Hugo) GGA1
LocusID (NCBI) 26088
Atlas_Id 63763
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 37608834 and ends at 37633564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTF3 (5q13.2)::GGA1 (22q13.1)EIF4G3 (1p36.12)::GGA1 (22q13.1)GCAT (22q13.1)::GGA1 (22q13.1)
GGA1 (22q13.1)::TRIOBP (22q13.1)SLC41A2 (12q23.3)::GGA1 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)GGA1   17842
Cards
Entrez_Gene (NCBI)GGA1    golgi associated, gamma adaptin ear containing, ARF binding protein 1
Aliases
GeneCards (Weizmann)GGA1
Ensembl hg19 (Hinxton)ENSG00000100083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100083 [Gene_View]  ENSG00000100083 [Sequence]  chr22:37608834-37633564 [Contig_View]  GGA1 [Vega]
ICGC DataPortalENSG00000100083
TCGA cBioPortalGGA1
AceView (NCBI)GGA1
Genatlas (Paris)GGA1
SOURCE (Princeton)GGA1
Genetics Home Reference (NIH)GGA1
Genomic and cartography
GoldenPath hg38 (UCSC)GGA1  -     chr22:37608834-37633564 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGA1  -     22q13.1   [Description]    (hg19-Feb_2009)
GoldenPathGGA1 - 22q13.1 [CytoView hg19]  GGA1 - 22q13.1 [CytoView hg38]
ImmunoBaseENSG00000100083
Genome Data Viewer NCBIGGA1 [Mapview hg19]  
OMIM606004   
Gene and transcription
Genbank (Entrez)AF190862 AF218584 AF233521 AK075256 AK092417
RefSeq transcript (Entrez)NM_001001560 NM_001001561 NM_001172687 NM_001172688 NM_001363771 NM_013365
Consensus coding sequences : CCDS (NCBI)GGA1
Gene ExpressionGGA1 [ NCBI-GEO ]   GGA1 [ EBI - ARRAY_EXPRESS ]   GGA1 [ SEEK ]   GGA1 [ MEM ]
Gene Expression Viewer (FireBrowse)GGA1 [ Firebrowse - Broad ]
GenevisibleExpression of GGA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26088
GTEX Portal (Tissue expression)GGA1
Human Protein AtlasENSG00000100083-GGA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GGA1
Human Protein Atlas [tissue]ENSG00000100083-GGA1 [tissue]
HPRD12078
Protein Interaction databases
BioGRIDGGA1
STRING (EMBL)GGA1
ZODIACGGA1
Ontologies - Pathways
Litterature
PubMed108 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGGA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:54:12 CET 2022

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