Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GGACT (gamma-glutamylamine cyclotransferase)

Identity

Alias_namesA2LD1
AIG2-like domain 1
Other alias
HGNC (Hugo) GGACT
LocusID (NCBI) 87769
Atlas_Id 63766
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 100530164 and ends at 100588792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GGACT (13q32.3) / DCLK1 (13q13.3)GGACT (13q32.3) / PCCA (13q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGACT   25100
Cards
Entrez_Gene (NCBI)GGACT  87769  gamma-glutamylamine cyclotransferase
AliasesA2LD1
GeneCards (Weizmann)GGACT
Ensembl hg19 (Hinxton)ENSG00000134864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134864 [Gene_View]  chr13:100530164-100588792 [Contig_View]  GGACT [Vega]
ICGC DataPortalENSG00000134864
TCGA cBioPortalGGACT
AceView (NCBI)GGACT
Genatlas (Paris)GGACT
WikiGenes87769
SOURCE (Princeton)GGACT
Genetics Home Reference (NIH)GGACT
Genomic and cartography
GoldenPath hg38 (UCSC)GGACT  -     chr13:100530164-100588792 -  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGACT  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblGGACT - 13q32.3 [CytoView hg19]  GGACT - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBIGGACT [Mapview hg19]  GGACT [Mapview hg38]
OMIM613378   
Gene and transcription
Genbank (Entrez)AK091974 AK093228 AK095850 BC001077 BC004360
RefSeq transcript (Entrez)NM_001195087 NM_033110
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGACT
Cluster EST : UnigeneHs.350868 [ NCBI ]
CGAP (NCI)Hs.350868
Alternative Splicing GalleryENSG00000134864
Gene ExpressionGGACT [ NCBI-GEO ]   GGACT [ EBI - ARRAY_EXPRESS ]   GGACT [ SEEK ]   GGACT [ MEM ]
Gene Expression Viewer (FireBrowse)GGACT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)87769
GTEX Portal (Tissue expression)GGACT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVM4
Splice isoforms : SwissVarQ9BVM4
Catalytic activity : Enzyme2.3.2.4 [ Enzyme-Expasy ]   2.3.2.42.3.2.4 [ IntEnz-EBI ]   2.3.2.4 [ BRENDA ]   2.3.2.4 [ KEGG ]   
PhosPhoSitePlusQ9BVM4
Domains : Interpro (EBI)AIG2-like    GGCT-like   
Domain families : Pfam (Sanger)GGACT (PF06094)   
Domain families : Pfam (NCBI)pfam06094   
Conserved Domain (NCBI)GGACT
DMDM Disease mutations87769
Blocks (Seattle)GGACT
PDB (SRS)3JUB    3JUC    3JUD   
PDB (PDBSum)3JUB    3JUC    3JUD   
PDB (IMB)3JUB    3JUC    3JUD   
PDB (RSDB)3JUB    3JUC    3JUD   
Structural Biology KnowledgeBase3JUB    3JUC    3JUD   
SCOP (Structural Classification of Proteins)3JUB    3JUC    3JUD   
CATH (Classification of proteins structures)3JUB    3JUC    3JUD   
SuperfamilyQ9BVM4
Human Protein AtlasENSG00000134864
Peptide AtlasQ9BVM4
IPIIPI00900332   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVM4
IntAct (EBI)Q9BVM4
FunCoupENSG00000134864
BioGRIDGGACT
STRING (EMBL)GGACT
ZODIACGGACT
Ontologies - Pathways
QuickGOQ9BVM4
Ontology : AmiGOgamma-glutamylcyclotransferase activity  protein binding  cellular modified amino acid catabolic process  extracellular exosome  
Ontology : EGO-EBIgamma-glutamylcyclotransferase activity  protein binding  cellular modified amino acid catabolic process  extracellular exosome  
NDEx NetworkGGACT
Atlas of Cancer Signalling NetworkGGACT
Wikipedia pathwaysGGACT
Orthology - Evolution
OrthoDB87769
GeneTree (enSembl)ENSG00000134864
Phylogenetic Trees/Animal Genes : TreeFamGGACT
HOVERGENQ9BVM4
HOGENOMQ9BVM4
Homologs : HomoloGeneGGACT
Homology/Alignments : Family Browser (UCSC)GGACT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGACT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGACT
dbVarGGACT
ClinVarGGACT
1000_GenomesGGACT 
Exome Variant ServerGGACT
ExAC (Exome Aggregation Consortium)GGACT (select the gene name)
Genetic variants : HAPMAP87769
Genomic Variants (DGV)GGACT [DGVbeta]
DECIPHERGGACT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGACT 
Mutations
ICGC Data PortalGGACT 
TCGA Data PortalGGACT 
Broad Tumor PortalGGACT
OASIS PortalGGACT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGGACT
BioMutasearch GGACT
DgiDB (Drug Gene Interaction Database)GGACT
DoCM (Curated mutations)GGACT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGACT (select a term)
intoGenGGACT
Cancer3DGGACT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613378   
Orphanet
MedgenGGACT
Genetic Testing Registry GGACT
NextProtQ9BVM4 [Medical]
TSGene87769
GENETestsGGACT
Target ValidationGGACT
Huge Navigator GGACT [HugePedia]
snp3D : Map Gene to Disease87769
BioCentury BCIQGGACT
ClinGenGGACT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD87769
Chemical/Pharm GKB GenePA164714645
Clinical trialGGACT
Miscellaneous
canSAR (ICR)GGACT (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGACT
EVEXGGACT
GoPubMedGGACT
iHOPGGACT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:50:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.