Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GGN (gametogenetin)

Identity

Alias_symbol (synonym)FLJ35713
MGC33369
Other alias-
HGNC (Hugo) GGN
LocusID (NCBI) 199720
Atlas_Id 55345
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38384352 and ends at 38388028 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGN   18869
Cards
Entrez_Gene (NCBI)GGN  199720  gametogenetin
Aliases
GeneCards (Weizmann)GGN
Ensembl hg19 (Hinxton)ENSG00000179168 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179168 [Gene_View]  chr19:38384352-38388028 [Contig_View]  GGN [Vega]
ICGC DataPortalENSG00000179168
TCGA cBioPortalGGN
AceView (NCBI)GGN
Genatlas (Paris)GGN
WikiGenes199720
SOURCE (Princeton)GGN
Genetics Home Reference (NIH)GGN
Genomic and cartography
GoldenPath hg38 (UCSC)GGN  -     chr19:38384352-38388028 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGN  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblGGN - 19q13.2 [CytoView hg19]  GGN - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIGGN [Mapview hg19]  GGN [Mapview hg38]
OMIM609966   
Gene and transcription
Genbank (Entrez)AF538035 AF538036 AF538037 AK057356 AK093032
RefSeq transcript (Entrez)NM_152657 NM_182477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGN
Cluster EST : UnigeneHs.447948 [ NCBI ]
CGAP (NCI)Hs.447948
Alternative Splicing GalleryENSG00000179168
Gene ExpressionGGN [ NCBI-GEO ]   GGN [ EBI - ARRAY_EXPRESS ]   GGN [ SEEK ]   GGN [ MEM ]
Gene Expression Viewer (FireBrowse)GGN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199720
GTEX Portal (Tissue expression)GGN
Human Protein AtlasENSG00000179168-GGN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UU5
Splice isoforms : SwissVarQ86UU5
PhosPhoSitePlusQ86UU5
Domains : Interpro (EBI)GGN   
Domain families : Pfam (Sanger)GGN (PF15685)   
Domain families : Pfam (NCBI)pfam15685   
Conserved Domain (NCBI)GGN
DMDM Disease mutations199720
Blocks (Seattle)GGN
SuperfamilyQ86UU5
Human Protein Atlas [tissue]ENSG00000179168-GGN [tissue]
Peptide AtlasQ86UU5
HPRD17036
IPIIPI00167943   IPI00640056   IPI00759762   IPI00384254   
Protein Interaction databases
DIP (DOE-UCLA)Q86UU5
IntAct (EBI)Q86UU5
FunCoupENSG00000179168
BioGRIDGGN
STRING (EMBL)GGN
ZODIACGGN
Ontologies - Pathways
QuickGOQ86UU5
Ontology : AmiGOprotein binding  double-strand break repair  multicellular organism development  gamete generation  spermatogenesis  cell differentiation  
Ontology : EGO-EBIprotein binding  double-strand break repair  multicellular organism development  gamete generation  spermatogenesis  cell differentiation  
NDEx NetworkGGN
Atlas of Cancer Signalling NetworkGGN
Wikipedia pathwaysGGN
Orthology - Evolution
OrthoDB199720
GeneTree (enSembl)ENSG00000179168
Phylogenetic Trees/Animal Genes : TreeFamGGN
HOVERGENQ86UU5
HOGENOMQ86UU5
Homologs : HomoloGeneGGN
Homology/Alignments : Family Browser (UCSC)GGN
Gene fusions - Rearrangements
Tumor Fusion PortalGGN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGN
dbVarGGN
ClinVarGGN
1000_GenomesGGN 
Exome Variant ServerGGN
ExAC (Exome Aggregation Consortium)ENSG00000179168
GNOMAD BrowserENSG00000179168
Genetic variants : HAPMAP199720
Genomic Variants (DGV)GGN [DGVbeta]
DECIPHERGGN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGN 
Mutations
ICGC Data PortalGGN 
TCGA Data PortalGGN 
Broad Tumor PortalGGN
OASIS PortalGGN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGGN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGGN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGN
DgiDB (Drug Gene Interaction Database)GGN
DoCM (Curated mutations)GGN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGN (select a term)
intoGenGGN
Cancer3DGGN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609966   
Orphanet
DisGeNETGGN
MedgenGGN
Genetic Testing Registry GGN
NextProtQ86UU5 [Medical]
TSGene199720
GENETestsGGN
Target ValidationGGN
Huge Navigator GGN [HugePedia]
snp3D : Map Gene to Disease199720
BioCentury BCIQGGN
ClinGenGGN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199720
Chemical/Pharm GKB GenePA134903452
Clinical trialGGN
Miscellaneous
canSAR (ICR)GGN (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGN
EVEXGGN
GoPubMedGGN
iHOPGGN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:14:30 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.