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GGNBP1 (gametogenetin binding protein 1 (pseudogene))

Identity

Alias_namesgametogenetin binding protein 1
Other alias-
HGNC (Hugo) GGNBP1
LocusID (NCBI) 449520
Atlas_Id 63769
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 33583738 and ends at 33589026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGNBP1   19427
Cards
Entrez_Gene (NCBI)GGNBP1  449520  gametogenetin binding protein 1 (pseudogene)
Aliases
GeneCards (Weizmann)GGNBP1
Ensembl hg19 (Hinxton)ENSG00000204188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204188 [Gene_View]  ENSG00000204188 [Sequence]  chr6:33583738-33589026 [Contig_View]  GGNBP1 [Vega]
ICGC DataPortalENSG00000204188
TCGA cBioPortalGGNBP1
AceView (NCBI)GGNBP1
Genatlas (Paris)GGNBP1
WikiGenes449520
SOURCE (Princeton)GGNBP1
Genetics Home Reference (NIH)GGNBP1
Genomic and cartography
GoldenPath hg38 (UCSC)GGNBP1  -     chr6:33583738-33589026 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGNBP1  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblGGNBP1 - 6p21.31 [CytoView hg19]  GGNBP1 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIGGNBP1 [Mapview hg19]  GGNBP1 [Mapview hg38]
OMIM609495   
Gene and transcription
Genbank (Entrez)AY383626 AY383627
RefSeq transcript (Entrez)NM_001005478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGNBP1
Cluster EST : UnigeneHs.582973 [ NCBI ]
CGAP (NCI)Hs.582973
Alternative Splicing GalleryENSG00000204188
Gene ExpressionGGNBP1 [ NCBI-GEO ]   GGNBP1 [ EBI - ARRAY_EXPRESS ]   GGNBP1 [ SEEK ]   GGNBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GGNBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)449520
GTEX Portal (Tissue expression)GGNBP1
Human Protein AtlasENSG00000204188-GGNBP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5YKI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5YKI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5YKI7
Splice isoforms : SwissVarQ5YKI7
PhosPhoSitePlusQ5YKI7
Domains : Interpro (EBI)GGNBP1    Ub_USP-typ   
Domain families : Pfam (Sanger)Ubiquitin_3 (PF14836)   
Domain families : Pfam (NCBI)pfam14836   
Conserved Domain (NCBI)GGNBP1
DMDM Disease mutations449520
Blocks (Seattle)GGNBP1
SuperfamilyQ5YKI7
Human Protein Atlas [tissue]ENSG00000204188-GGNBP1 [tissue]
Peptide AtlasQ5YKI7
IPIIPI00470598   IPI00479427   
Protein Interaction databases
DIP (DOE-UCLA)Q5YKI7
IntAct (EBI)Q5YKI7
FunCoupENSG00000204188
BioGRIDGGNBP1
STRING (EMBL)GGNBP1
ZODIACGGNBP1
Ontologies - Pathways
QuickGOQ5YKI7
Ontology : AmiGOmitochondrial fission  mitochondrial intermembrane space  Golgi apparatus  multicellular organism development  spermatogenesis  membrane  cell differentiation  
Ontology : EGO-EBImitochondrial fission  mitochondrial intermembrane space  Golgi apparatus  multicellular organism development  spermatogenesis  membrane  cell differentiation  
NDEx NetworkGGNBP1
Atlas of Cancer Signalling NetworkGGNBP1
Wikipedia pathwaysGGNBP1
Orthology - Evolution
OrthoDB449520
GeneTree (enSembl)ENSG00000204188
Phylogenetic Trees/Animal Genes : TreeFamGGNBP1
HOVERGENQ5YKI7
HOGENOMQ5YKI7
Homologs : HomoloGeneGGNBP1
Homology/Alignments : Family Browser (UCSC)GGNBP1
Gene fusions - Rearrangements
Fusion : QuiverGGNBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGNBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGNBP1
dbVarGGNBP1
ClinVarGGNBP1
1000_GenomesGGNBP1 
Exome Variant ServerGGNBP1
ExAC (Exome Aggregation Consortium)ENSG00000204188
GNOMAD BrowserENSG00000204188
Varsome BrowserGGNBP1
Genetic variants : HAPMAP449520
Genomic Variants (DGV)GGNBP1 [DGVbeta]
DECIPHERGGNBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGNBP1 
Mutations
ICGC Data PortalGGNBP1 
TCGA Data PortalGGNBP1 
Broad Tumor PortalGGNBP1
OASIS PortalGGNBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGGNBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGGNBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGNBP1
DgiDB (Drug Gene Interaction Database)GGNBP1
DoCM (Curated mutations)GGNBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGNBP1 (select a term)
intoGenGGNBP1
Cancer3DGGNBP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609495   
Orphanet
DisGeNETGGNBP1
MedgenGGNBP1
Genetic Testing Registry GGNBP1
NextProtQ5YKI7 [Medical]
TSGene449520
GENETestsGGNBP1
Target ValidationGGNBP1
Huge Navigator GGNBP1 [HugePedia]
snp3D : Map Gene to Disease449520
BioCentury BCIQGGNBP1
ClinGenGGNBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD449520
Chemical/Pharm GKB GenePA162389393
Clinical trialGGNBP1
Miscellaneous
canSAR (ICR)GGNBP1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGNBP1
EVEXGGNBP1
GoPubMedGGNBP1
iHOPGGNBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:14 CEST 2018

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